Mercurial > repos > testtool > get_geo
changeset 30:4bb463a26542 draft
Deleted selected files
| author | testtool |
|---|---|
| date | Thu, 09 Feb 2017 08:13:06 -0500 |
| parents | eb1a8cedf6c5 |
| children | f81cbc34657c |
| files | GEO/getGEO.xml |
| diffstat | 1 files changed, 0 insertions(+), 40 deletions(-) [+] |
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--- a/GEO/getGEO.xml Wed Feb 08 09:13:39 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,40 +0,0 @@ -<tool id="GEO" name="getGEO" version="1.16.2"> - <?xml version='1.0' encoding='utf-8'?> - <requirements> - <requirement type="package" version="3.2.1">R</requirement> - </requirements> -<stdio> - <exit_code range="1:" /> -</stdio> - <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> - <inputs> - <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> - <validator type="empty_field" message="This field is required."/> - </param> - </inputs> - <outputs> - <data format="csv" name="MetaTable" label="MetaData.csv"/> - <data format="csv" name="IlmnTable" label="IlmnData.csv"/> - <data format="csv" name="gmTable" label="gmSet.csv"/> - </outputs> - <tests> - <test> - <param name="test"> - <element name="test-data"> - <collection type="data"> - <element name="GSMTable" value="test-data/input.csv" /> - </collection> - </element> - </param> - <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/> - <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/> - <output format="csv" name="gmTable" label="test-data/gmTable.csv"/> - </test> - </tests> - <help> -**Description** -</help> -<citations> -GEO -</citations> -</tool>