Mercurial > repos > testtool > get_gr_set

diff GRsetFromGEO/.Rhistory @ 63:ddd126dbb19a draft default tip

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author testtool
date Thu, 11 Jan 2018 12:58:58 -0500
parents 7511130b5068
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GRsetFromGEO/.Rhistory	Thu Jan 11 12:58:58 2018 -0500
@@ -0,0 +1,16 @@
+require("minfi", quietly = TRUE)
+?require
+require("minfi", quietly = TRUE)
+minfi
+as.data.frame(GRset)
+GRset <- getGenomicRatioSetFromGEO(GSE)
+getGenomicRatioSetFromGEO
+require("minfi", quietly = TRUE)
+options(warn = -1)
+options("download.file.method"="wget")
+args <- commandArgs(trailingOnly = TRUE)
+GSE = args[1]
+output = args[2]
+GRset <- getGenomicRatioSetFromGEO(GSE)
+save(GRset,file = output)
+sessionInfo()