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view GRsetFromGEO/GRsetFromGEO.R @ 8:5b1a9d86338c draft

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author testtool
date Mon, 12 Jun 2017 13:35:47 -0400
parents c31140daf71f
children 6908c2998731
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require("minfi", quietly = TRUE)

options(warn = -1)
options('download.file.method'='libcurl')

args <- commandArgs(trailingOnly = TRUE)
GSE = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(GSE)

save(GRset,file = output)