Mercurial > repos > thanhlv > bakta

annotate test-data/TEST_2/TEST_2.gbff @ 5:7686d59927cd draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
author thanhlv
date Fri, 28 Apr 2023 18:25:36 +0000
parents 54ca20519f70
children
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54ca20519f70 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
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1 LOCUS NC_002127.1 1330 bp DNA circular BCT 16-SEP-2022
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2 DEFINITION Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence.
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3 ACCESSION NC_002127
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4 VERSION NC_002127.1
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5 KEYWORDS .
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6 SOURCE Escherichia coli o157:h7 Sakai
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7 ORGANISM Escherichia coli o157:h7 Sakai
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8 .
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9 COMMENT Annotated with Bakta
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10 Software: v1.5.0
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11 Database: v4.0
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12 DOI: 10.1099/mgen.0.000685
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13 URL: github.com/oschwengers/bakta
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14
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15 ##Genome Annotation Summary:##
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16 Annotation Date :: 09/16/2022, 07:32:10
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17 Annotation Pipeline :: Bakta
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18 Annotation Software version :: v1.5.0
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19 Annotation Database version :: v4.0
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20 CDSs :: 2
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21 tRNAs :: 0
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22 tmRNAs :: 0
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23 rRNAs :: 0
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24 ncRNAs :: 0
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25 regulatory ncRNAs :: 0
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26 CRISPR Arrays :: 0
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27 oriCs/oriVs :: 0
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28 oriTs :: 0
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29 gaps :: 0
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30 pseudogenes :: 0
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31 FEATURES Location/Qualifiers
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32 source 1..1330
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33 /mol_type="genomic DNA"
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34 /organism="Escherichia coli o157:h7 Sakai"
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35 /strain="Sakai"
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36 /plasmid="pOSAK1"
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37 gene 413..736
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38 /locus_tag="IHHALP_00005"
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39 CDS 413..736
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40 /product="hypothetical protein"
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41 /locus_tag="IHHALP_00005"
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42 /protein_id="gnl|Bakta|IHHALP_00005"
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43 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
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44 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
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45 MAD"
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46 /codon_start=1
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47 /transl_table=11
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48 /inference="ab initio prediction:Prodigal:2.6"
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49 gene complement(join(971..1330,1..141))
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50 /locus_tag="IHHALP_00010"
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51 CDS complement(join(971..1330,1..141))
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52 /product="hypothetical protein"
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53 /locus_tag="IHHALP_00010"
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54 /protein_id="gnl|Bakta|IHHALP_00010"
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55 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
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56 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
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57 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
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58 IPI"
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59 /codon_start=1
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60 /transl_table=11
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61 /inference="ab initio prediction:Prodigal:2.6"
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62 ORIGIN
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63 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
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64 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
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65 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
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66 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
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67 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
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68 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
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69 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
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70 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
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71 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
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72 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
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73 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
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74 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
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75 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
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76 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
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77 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
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78 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
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79 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
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80 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
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81 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
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82 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
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83 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
54ca20519f70 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
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84 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
54ca20519f70 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
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85 1321 cttctatttg
54ca20519f70 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty
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86 //