view test-data/TEST_2/TEST_2.gbff @ 5:7686d59927cd draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 6b06711cfba45855d5a992ed1c73c472eaef644f-dirty

LOCUS       NC_002127.1             1330 bp    DNA     circular BCT 16-SEP-2022
DEFINITION  Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence.
ACCESSION   NC_002127
VERSION     NC_002127.1
KEYWORDS    .
SOURCE      Escherichia coli o157:h7 Sakai
  ORGANISM  Escherichia coli o157:h7 Sakai
            .
COMMENT     Annotated with Bakta
            Software: v1.5.0
            Database: v4.0
            DOI: 10.1099/mgen.0.000685
            URL: github.com/oschwengers/bakta
            
            ##Genome Annotation Summary:##
            Annotation Date                :: 09/16/2022, 07:32:10
            Annotation Pipeline            :: Bakta
            Annotation Software version    ::  v1.5.0
            Annotation Database version    ::  v4.0
            CDSs                           ::     2
            tRNAs                          ::     0
            tmRNAs                         ::     0
            rRNAs                          ::     0
            ncRNAs                         ::     0
            regulatory ncRNAs              ::     0
            CRISPR Arrays                  ::     0
            oriCs/oriVs                    ::     0
            oriTs                          ::     0
            gaps                           ::     0
            pseudogenes                    ::     0
FEATURES             Location/Qualifiers
     source          1..1330
                     /mol_type="genomic DNA"
                     /organism="Escherichia coli o157:h7 Sakai"
                     /strain="Sakai"
                     /plasmid="pOSAK1"
     gene            413..736
                     /locus_tag="IHHALP_00005"
     CDS             413..736
                     /product="hypothetical protein"
                     /locus_tag="IHHALP_00005"
                     /protein_id="gnl|Bakta|IHHALP_00005"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /codon_start=1
                     /transl_table=11
                     /inference="ab initio prediction:Prodigal:2.6"
     gene            complement(join(971..1330,1..141))
                     /locus_tag="IHHALP_00010"
     CDS             complement(join(971..1330,1..141))
                     /product="hypothetical protein"
                     /locus_tag="IHHALP_00010"
                     /protein_id="gnl|Bakta|IHHALP_00010"
                     /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
                     EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
                     YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
                     IPI"
                     /codon_start=1
                     /transl_table=11
                     /inference="ab initio prediction:Prodigal:2.6"
ORIGIN
        1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
       61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
      121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
      181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
      241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
      301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
      361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
      421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
      481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
      541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
      601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
      661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
      721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
      781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
      841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
      901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
      961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
     1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
     1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
     1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
     1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
     1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
     1321 cttctatttg
//