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comparison socru.xml @ 4:bf0efbba5e8d draft

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planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/socru commit 5215b942916d8c1186656f098cfdf4db52b5854b-dirty
author thanhlv
date Fri, 17 May 2019 11:19:28 -0400
parents 435f1b59e064
children 602f0fe854a3
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equal deleted inserted replaced
3:686ffd8c4f97 4:bf0efbba5e8d
15 --threads \${GALAXY_SLOTS:-4} 15 --threads \${GALAXY_SLOTS:-4}
16 16
17 --top_blast_hits top_blast_hits.tsv 17 --top_blast_hits top_blast_hits.tsv
18 18
19 #if str($opt_args.max_bases_from_ends) != "" 19 #if str($opt_args.max_bases_from_ends) != ""
20 --max_bases_from_ends $$opt_args.max_bases_from_ends 20 --max_bases_from_ends $opt_args.max_bases_from_ends
21 #end if 21 #end if
22 22
23 --not_circular $opt_args.not_circular 23 #if $opt_args.not_circular
24 --not_circular
25 #end if
26
24 --min_bit_score $opt_args.min_bit_score 27 --min_bit_score $opt_args.min_bit_score
25 --min_alignment_length $opt_args.min_alignment_length 28 --min_alignment_length $opt_args.min_alignment_length
26 29
27 #if $opt_args.verbose 30 #if $opt_args.verbose
28 $opt_args.verbose 31 $opt_args.verbose
497 500
498 Order and orientation of complete bacterial genomes 501 Order and orientation of complete bacterial genomes
499 502
500 Documentation can be found at `<https://github.com/quadram-institute-bioscience/socru>`_. 503 Documentation can be found at `<https://github.com/quadram-institute-bioscience/socru>`_.
501 ]]></help> 504 ]]></help>
502 <!-- <expand macro="citations" /> --> 505 <expand macro="citations" />
503 </tool> 506 </tool>