diff socru.xml @ 4:bf0efbba5e8d draft

planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/socru commit 5215b942916d8c1186656f098cfdf4db52b5854b-dirty

--- a/socru.xml	Thu Feb 14 10:31:51 2019 -0500
+++ b/socru.xml	Fri May 17 11:19:28 2019 -0400
@@ -17,10 +17,13 @@
         --top_blast_hits top_blast_hits.tsv
         
         #if str($opt_args.max_bases_from_ends) != ""
-            --max_bases_from_ends $$opt_args.max_bases_from_ends
+            --max_bases_from_ends $opt_args.max_bases_from_ends
         #end if
         
-        --not_circular $opt_args.not_circular
+        #if $opt_args.not_circular
+            --not_circular
+        #end if
+
         --min_bit_score $opt_args.min_bit_score
         --min_alignment_length $opt_args.min_alignment_length
 
@@ -499,5 +502,5 @@
     
     Documentation can be found at `<https://github.com/quadram-institute-bioscience/socru>`_.
     ]]></help>
- <!-- <expand macro="citations" /> -->
+ <expand macro="citations" />
 </tool>