Mercurial > repos > thomaswollmann > count_objects
comparison count_objects.xml @ 0:f02a2d0f407c draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author | thomaswollmann |
---|---|
date | Wed, 16 Jan 2019 15:34:44 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:f02a2d0f407c |
---|---|
1 <?xml version="1.0"?> | |
2 <tool name="Count Objects" id="ip_count_objects" version="0.0.4"> | |
3 <description>Count Objects</description> | |
4 <requirements> | |
5 <requirement type="package" version="0.14.0">scikit-image</requirement> | |
6 <requirement type="package" version="1.15.4">numpy</requirement> | |
7 </requirements> | |
8 <command> | |
9 <![CDATA[ | |
10 python '$__tool_directory__/count_objects.py' '$input' '$output' | |
11 ]]> | |
12 </command> | |
13 <inputs> | |
14 <param name="input" type="data" format="tiff" label="Source file" /> | |
15 </inputs> | |
16 <outputs> | |
17 <data format="tabular" name="output" /> | |
18 </outputs> | |
19 <tests> | |
20 <test> | |
21 <param name="input" value="input.tiff"/> | |
22 <output name="output" value="table.csv" ftype="tabular"/> | |
23 </test> | |
24 </tests> | |
25 <help> | |
26 This tool counts objects in a labeled image. | |
27 </help> | |
28 <citations> | |
29 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
30 </citations> | |
31 </tool> |