Mercurial > repos > thomaswollmann > count_objects
view count_objects.xml @ 0:f02a2d0f407c draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author | thomaswollmann |
---|---|
date | Wed, 16 Jan 2019 15:34:44 -0500 |
parents | |
children |
line wrap: on
line source
<?xml version="1.0"?> <tool name="Count Objects" id="ip_count_objects" version="0.0.4"> <description>Count Objects</description> <requirements> <requirement type="package" version="0.14.0">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> </requirements> <command> <![CDATA[ python '$__tool_directory__/count_objects.py' '$input' '$output' ]]> </command> <inputs> <param name="input" type="data" format="tiff" label="Source file" /> </inputs> <outputs> <data format="tabular" name="output" /> </outputs> <tests> <test> <param name="input" value="input.tiff"/> <output name="output" value="table.csv" ftype="tabular"/> </test> </tests> <help> This tool counts objects in a labeled image. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>