comparison visceral-evaluatesegmentation.xml @ 0:cc77c9bf7b4a draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f

0:cc77c9bf7b4a

<tool id="visceral_evaluatesegmentation" name="Visceral - Evaluate Segmentation" version="0.4">
  <description>Evaluate Segmentation</description>
  <requirements>
    <requirement type="package">visceral-evaluatesegmentation</requirement>
  </requirements>
  <command>
        <![CDATA[
		EvaluateSegmentation '$gt_path' '$seg_path' -xml '$output'
        ]]>
  </command>
  <inputs>
    <param name="gt_path" type="data" format="tiff,png,jpg,bmp" label="Ground Truth Image"/>
    <param name="seg_path" type="data" format="tiff,png,jpg,bmp" label="Segmented Image"/>
  </inputs>
  <outputs>
    <data format="xml" name="output"/>
  </outputs>
  <tests>
    <test>
	    <param name="gt_path" value="sample.png" />
	    <param name="seg_path" value="sample.png" />
	    <output name="output" value="out.xml" ftype="xml" lines_diff="10" />
    </test>
  </tests>
  <help>Calculates Metrics for Evaluating Image Segmentation</help>
  <citations>
	  <citation type="bibtex">@article{TA2015,
    author = {Abdel Aziz Taha and Allan Hanbury},
    title = {Metrics for Evaluating 3{D} Medical Image Segmentation: analysis, selection, and tool},
    journal = {BMC Medical Imaging},
    year = {2015},
    volume = {15},
    pages = {29},
    month = {August},
}</citation>
  </citations>
</tool>