diff visceral-evaluatesegmentation.xml @ 0:cc77c9bf7b4a draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/visceral-evaluatesegmentation.xml	Thu Feb 16 05:18:42 2017 -0500
@@ -0,0 +1,37 @@
+<tool id="visceral_evaluatesegmentation" name="Visceral - Evaluate Segmentation" version="0.4">
+  <description>Evaluate Segmentation</description>
+  <requirements>
+    <requirement type="package">visceral-evaluatesegmentation</requirement>
+  </requirements>
+  <command>
+        <![CDATA[
+		EvaluateSegmentation '$gt_path' '$seg_path' -xml '$output'
+        ]]>
+  </command>
+  <inputs>
+    <param name="gt_path" type="data" format="tiff,png,jpg,bmp" label="Ground Truth Image"/>
+    <param name="seg_path" type="data" format="tiff,png,jpg,bmp" label="Segmented Image"/>
+  </inputs>
+  <outputs>
+    <data format="xml" name="output"/>
+  </outputs>
+  <tests>
+    <test>
+	    <param name="gt_path" value="sample.png" />
+	    <param name="seg_path" value="sample.png" />
+	    <output name="output" value="out.xml" ftype="xml" lines_diff="10" />
+    </test>
+  </tests>
+  <help>Calculates Metrics for Evaluating Image Segmentation</help>
+  <citations>
+	  <citation type="bibtex">@article{TA2015,
+    author = {Abdel Aziz Taha and Allan Hanbury},
+    title = {Metrics for Evaluating 3{D} Medical Image Segmentation: analysis, selection, and tool},
+    journal = {BMC Medical Imaging},
+    year = {2015},
+    volume = {15},
+    pages = {29},
+    month = {August},
+}</citation>
+  </citations>
+</tool>