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comparison test-data/chrMT-PE-VCF-BAM-panic.vcf @ 0:6e75a84e9338 draft

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planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
author thondeboer
date Tue, 15 May 2018 02:39:53 -0400
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-1:000000000000 0:6e75a84e9338
1 ##fileformat=VCFv4.1
2 ##reference=chrMT.fa
3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
4 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
5 ##INFO=<ID=VMX,Number=1,Type=String,Description="SNP is Missense in these Read Frames">
6 ##INFO=<ID=VNX,Number=1,Type=String,Description="SNP is Nonsense in these Read Frames">
7 ##INFO=<ID=VFX,Number=1,Type=String,Description="Indel Causes Frameshift">
8 ##INFO=<ID=WP,Number=A,Type=Integer,Description="NEAT-GenReads ploidy indicator">
9 ##ALT=<ID=DEL,Description="Deletion">
10 ##ALT=<ID=DUP,Description="Duplication">
11 ##ALT=<ID=INS,Description="Insertion of novel sequence">
12 ##ALT=<ID=INV,Description="Inversion">
13 ##ALT=<ID=CNV,Description="Copy number variable region">
14 ##ALT=<ID=TRANS,Description="Translocation">
15 ##ALT=<ID=INV-TRANS,Description="Inverted translocation">
16 #CHROM POS ID REF ALT QUAL FILTER INFO
17 MT 550 . A G . PASS WP=0/1/0
18 MT 553 . C CGAGGC . PASS WP=0/0/1
19 MT 622 . G T . PASS WP=0/1/0
20 MT 626 . G A . PASS WP=0/0/1
21 MT 627 . G A . PASS WP=0/0/1
22 MT 669 . T C . PASS WP=1/0/0
23 MT 677 . CTCT C . PASS WP=0/0/1
24 MT 689 . T C . PASS WP=0/1/0
25 MT 691 . A T . PASS WP=0/0/1
26 MT 702 . C T . PASS WP=0/0/1
27 MT 798 . C T . PASS WP=0/0/1
28 MT 821 . T G . PASS WP=1/0/0
29 MT 858 . C T . PASS WP=1/0/0
30 MT 866 . A G . PASS WP=0/0/1
31 MT 915 . C G . PASS WP=0/0/1
32 MT 980 . T A . PASS WP=1/0/0
33 MT 1000 . T A . PASS WP=1/0/0
34 MT 1008 . A G . PASS WP=0/1/0
35 MT 1041 . A G . PASS WP=0/1/0
36 MT 1072 . G C . PASS WP=1/0/0
37 MT 1082 . A G . PASS WP=1/0/0
38 MT 1099 . C A . PASS WP=0/0/1
39 MT 1116 . A G . PASS WP=0/0/1
40 MT 1124 . A G . PASS WP=1/0/0
41 MT 1136 . C G . PASS WP=0/1/0
42 MT 1210 . T TC . PASS WP=0/0/1
43 MT 1224 . C G . PASS WP=0/0/1
44 MT 1250 . C CTTCTC . PASS WP=1/0/0
45 MT 1292 . A T . PASS WP=1/0/0
46 MT 1314 . C G . PASS WP=0/0/1
47 MT 1330 . C CG . PASS WP=0/0/1
48 MT 1330 . C T . PASS WP=0/1/0
49 MT 1334 . G A . PASS WP=1/0/0
50 MT 1361 . G T . PASS WP=0/1/0
51 MT 1378 . C T . PASS WP=1/0/0
52 MT 1400 . T G . PASS WP=1/0/0
53 MT 1404 . A G . PASS WP=1/0/0
54 MT 1423 . A G . PASS WP=0/1/0
55 MT 1432 . T TCATTGTTT . PASS WP=0/0/1
56 MT 1453 . A C . PASS WP=0/1/0
57 MT 1456 . T A . PASS WP=0/1/0
58 MT 1516 . G A . PASS WP=1/0/0
59 MT 1528 . A G . PASS WP=1/0/0
60 MT 1544 . A ACGGGA . PASS WP=0/0/1
61 MT 1633 . T C . PASS WP=0/1/0
62 MT 1635 . C G . PASS WP=0/1/0
63 MT 1683 . C CA . PASS WP=0/0/1
64 MT 1725 . C T . PASS WP=0/1/0
65 MT 1776 . G A . PASS WP=0/1/0
66 MT 1792 . G GT . PASS WP=0/0/1
67 MT 1797 . G A . PASS WP=0/1/0
68 MT 1802 . A C . PASS WP=1/0/0
69 MT 1878 . T C . PASS WP=0/1/0
70 MT 1879 . G C . PASS WP=1/0/0
71 MT 1909 . A G . PASS WP=0/0/1
72 MT 1937 . A AC . PASS WP=0/0/1
73 MT 1982 . G A . PASS WP=0/1/0
74 MT 1984 . A G . PASS WP=0/0/1
75 MT 1991 . A AATGCT . PASS WP=0/0/1
76 MT 2027 . A T . PASS WP=1/0/0
77 MT 2034 . A G . PASS WP=1/0/0
78 MT 2075 . T C . PASS WP=1/0/1
79 MT 2120 . GGAC G . PASS WP=0/1/0
80 MT 2135 . A G . PASS WP=0/1/0
81 MT 2157 . T C . PASS WP=0/0/1
82 MT 2177 . T G . PASS WP=0/0/1
83 MT 2225 . C T . PASS WP=0/0/1
84 MT 2229 . A G . PASS WP=0/0/1
85 MT 2312 . AACAT A . PASS WP=1/0/0
86 MT 2361 . G A . PASS WP=0/1/0
87 MT 2363 . A G . PASS WP=0/1/0
88 MT 2384 . A G . PASS WP=1/1/1
89 MT 2402 . A G . PASS WP=1/0/0
90 MT 2494 . C T . PASS WP=0/1/0
91 MT 2497 . T C . PASS WP=1/0/0
92 MT 2510 . T G . PASS WP=0/1/0
93 MT 2528 . G GATAAACT . PASS WP=1/0/0
94 MT 2530 . A G . PASS WP=0/0/1
95 MT 2554 . A G . PASS WP=0/1/0
96 MT 2564 . A T . PASS WP=1/0/0
97 MT 2626 . T TT . PASS WP=0/0/1
98 MT 2636 . G A . PASS WP=0/1/0
99 MT 2646 . G A . PASS WP=1/0/0
100 MT 2663 . C G . PASS WP=1/0/0
101 MT 2673 . G A . PASS WP=0/0/1
102 MT 2717 . A G . PASS WP=1/0/0
103 MT 2737 . T C . PASS WP=0/0/1
104 MT 2739 . T C . PASS WP=0/0/1
105 MT 2756 . C T . PASS WP=1/0/0
106 MT 2846 . G T . PASS WP=0/1/0
107 MT 2851 . A G . PASS WP=0/0/1
108 MT 2889 . C A . PASS WP=1/0/0
109 MT 2938 . A AG . PASS WP=1/0/0
110 MT 2947 . TC T . PASS WP=1/0/0
111 MT 2979 . T C . PASS WP=1/0/0
112 MT 3010 . G A . PASS WP=1/0/0
113 MT 3011 . A G . PASS WP=0/0/1
114 MT 3043 . C T . PASS WP=1/0/0
115 MT 3066 . C CA . PASS WP=0/0/1
116 MT 3104 . T A . PASS WP=0/0/1
117 MT 3114 . T A . PASS WP=0/1/0
118 MT 3201 . A G . PASS WP=1/0/0
119 MT 3253 . T C . PASS WP=0/0/1
120 MT 3288 . A G . PASS WP=0/1/0
121 MT 3301 . A T . PASS WP=0/1/0
122 MT 3325 . C G . PASS WP=0/1/0
123 MT 3363 . C T . PASS WP=0/1/0
124 MT 3375 . C T . PASS WP=0/0/1
125 MT 3385 . A G . PASS WP=0/1/0
126 MT 3416 . CCAACG C . PASS WP=0/0/1
127 MT 3460 . G A . PASS WP=0/1/0
128 MT 3539 . C CACA . PASS WP=0/1/0
129 MT 3544 . A G . PASS WP=0/1/0
130 MT 3647 . A G . PASS WP=1/0/0
131 MT 3809 . C A . PASS WP=1/0/0
132 MT 3901 . G GT . PASS WP=1/0/0
133 MT 3928 . G A . PASS WP=0/0/1
134 MT 3929 . TC T . PASS WP=1/0/0
135 MT 3955 . G A . PASS WP=0/1/0
136 MT 3958 . G A . PASS WP=0/0/1
137 MT 3967 . G A . PASS WP=1/0/0
138 MT 3987 . A T . PASS WP=0/1/0
139 MT 3998 . T C . PASS WP=0/1/0
140 MT 4114 . T C . PASS WP=1/0/0
141 MT 4121 . G C . PASS WP=0/1/0
142 MT 4123 . A G . PASS WP=0/1/0
143 MT 4150 . T A . PASS WP=1/0/0
144 MT 4171 . C T . PASS WP=0/1/0
145 MT 4178 . A G . PASS WP=0/0/1
146 MT 4201 . G A . PASS WP=1/0/0
147 MT 4225 . A G . PASS WP=1/0/0
148 MT 4251 . C CT . PASS WP=0/1/0
149 MT 4276 . A AA . PASS WP=0/1/0
150 MT 4317 . A G . PASS WP=1/0/0
151 MT 4353 . T C . PASS WP=1/0/0
152 MT 4359 . A C . PASS WP=1/0/0
153 MT 4442 . A G . PASS WP=1/0/0
154 MT 4448 . T A . PASS WP=0/0/1
155 MT 4454 . T G . PASS WP=1/0/0
156 MT 4459 . T A . PASS WP=1/0/0
157 MT 4460 . T C . PASS WP=0/1/0
158 MT 4468 . T G . PASS WP=0/0/1
159 MT 4469 . A G . PASS WP=1/0/0
160 MT 4559 . A G . PASS WP=1/0/0
161 MT 4569 . G A . PASS WP=1/0/0
162 MT 4572 . A ACG . PASS WP=1/0/0
163 MT 4587 . T A . PASS WP=0/1/0
164 MT 4589 . T C . PASS WP=1/0/0
165 MT 4627 . C T . PASS WP=1/0/1
166 MT 4653 . A G . PASS WP=0/1/0
167 MT 4654 . C T . PASS WP=0/1/0
168 MT 4669 . C T . PASS WP=0/1/0
169 MT 4684 . T C . PASS WP=1/0/0
170 MT 4719 . T TCCGTT . PASS WP=0/0/1
171 MT 4771 . C T . PASS WP=1/0/0
172 MT 4802 . T C . PASS WP=0/1/0
173 MT 4803 . C G . PASS WP=1/0/0
174 MT 4811 . A G . PASS WP=0/1/0
175 MT 4812 . G A . PASS WP=0/0/1
176 MT 4845 . T C . PASS WP=1/0/0
177 MT 4851 . C T . PASS WP=1/0/0
178 MT 4853 . G A . PASS WP=1/0/0
179 MT 4867 . G GC . PASS WP=0/1/0
180 MT 4869 . C T . PASS WP=0/1/0
181 MT 4908 . C T . PASS WP=1/0/0
182 MT 4977 . T C . PASS WP=0/1/0
183 MT 4995 . C T . PASS WP=0/0/1
184 MT 4999 . A T . PASS WP=1/0/0
185 MT 5015 . C A . PASS WP=0/1/0
186 MT 5018 . A T . PASS WP=0/0/1
187 MT 5112 . G A . PASS WP=1/0/0
188 MT 5133 . A G . PASS WP=0/1/0
189 MT 5382 . CT C . PASS WP=0/0/1
190 MT 5484 . A G . PASS WP=0/1/0
191 MT 5497 . T C . PASS WP=0/0/1
192 MT 5505 . A AAGA . PASS WP=0/1/0
193 MT 5506 . T A . PASS WP=1/0/0
194 MT 5556 . G A . PASS WP=1/0/0
195 MT 5632 . C A . PASS WP=1/0/0
196 MT 5639 . A G . PASS WP=1/0/0
197 MT 5672 . T C . PASS WP=0/0/1
198 MT 5694 . A G . PASS WP=0/1/0
199 MT 5696 . C T . PASS WP=0/1/0
200 MT 5860 . T A . PASS WP=0/0/1
201 MT 5898 . C T . PASS WP=1/0/0
202 MT 5901 . C T . PASS WP=1/0/0
203 MT 5912 . C T . PASS WP=0/0/1
204 MT 5914 . A AC . PASS WP=1/0/0
205 MT 5930 . T C . PASS WP=0/0/1
206 MT 5932 . C G . PASS WP=0/0/1
207 MT 5969 . C A . PASS WP=0/0/1
208 MT 5988 . C T . PASS WP=0/0/1
209 MT 6079 . C A . PASS WP=0/1/0
210 MT 6110 . A G . PASS WP=1/0/0
211 MT 6122 . C T . PASS WP=0/1/0
212 MT 6128 . C T . PASS WP=1/1/1
213 MT 6141 . A T . PASS WP=0/1/0
214 MT 6229 . T C . PASS WP=1/0/0
215 MT 6247 . C A . PASS WP=1/0/0
216 MT 6250 . C T . PASS WP=0/1/0
217 MT 6271 . G T . PASS WP=0/1/0
218 MT 6310 . A AA . PASS WP=1/0/0
219 MT 6334 . A T . PASS WP=0/0/1
220 MT 6339 . A G . PASS WP=0/0/1
221 MT 6350 . C T . PASS WP=0/1/0
222 MT 6362 . A AC . PASS WP=0/1/0
223 MT 6408 . A C . PASS WP=0/0/1
224 MT 6417 . A G . PASS WP=1/0/0
225 MT 6431 . A G . PASS WP=0/1/0
226 MT 6432 . A G . PASS WP=1/0/0
227 MT 6463 . C T . PASS WP=1/0/0
228 MT 6473 . CAC C . PASS WP=0/1/0
229 MT 6524 . T C . PASS WP=0/0/1
230 MT 6539 . C T . PASS WP=0/1/0
231 MT 6554 . C T . PASS WP=1/0/0
232 MT 6623 . C T . PASS WP=0/1/0
233 MT 6624 . C T . PASS WP=0/0/1
234 MT 6625 . C G . PASS WP=0/0/1
235 MT 6628 . A G . PASS WP=1/0/0
236 MT 6634 . A G . PASS WP=0/1/0
237 MT 6647 . A G . PASS WP=1/0/0
238 MT 6663 . A G . PASS WP=0/1/0
239 MT 6708 . G A . PASS WP=1/0/0
240 MT 6756 . T TGGTCAAGCTG . PASS WP=0/0/1
241 MT 6780 . T C . PASS WP=1/0/0
242 MT 6816 . T C . PASS WP=0/1/0
243 MT 6820 . C T . PASS WP=1/0/0
244 MT 6861 . G GAG . PASS WP=0/1/0
245 MT 6941 . T C . PASS WP=0/0/1
246 MT 6956 . T C . PASS WP=1/0/0
247 MT 6967 . G A . PASS WP=0/0/1
248 MT 7034 . C G . PASS WP=0/0/1
249 MT 7100 . A G . PASS WP=0/0/1
250 MT 7120 . A G . PASS WP=0/0/1
251 MT 7124 . A G . PASS WP=0/0/1
252 MT 7205 . C T . PASS WP=0/1/0
253 MT 7262 . A ACTTAT . PASS WP=0/0/1
254 MT 7270 . T C . PASS WP=0/1/0
255 MT 7314 . A G . PASS WP=1/0/0
256 MT 7320 . T C . PASS WP=0/1/0
257 MT 7362 . G GTT . PASS WP=0/0/1
258 MT 7379 . G A . PASS WP=1/0/0
259 MT 7462 . C CAG . PASS WP=1/0/0
260 MT 7479 . G GA . PASS WP=1/0/0
261 MT 7493 . C A . PASS WP=1/0/0
262 MT 7511 . T TAC . PASS WP=1/1/1
263 MT 7527 . G A . PASS WP=1/0/0
264 MT 7535 . A G . PASS WP=0/0/1
265 MT 7540 . A G . PASS WP=1/1/1
266 MT 7583 . T C . PASS WP=0/0/1
267 MT 7588 . G C . PASS WP=1/0/0
268 MT 7610 . C T . PASS WP=0/0/1
269 MT 7614 . A AA . PASS WP=1/0/0
270 MT 7622 . A C . PASS WP=0/0/1
271 MT 7642 . G A . PASS WP=0/1/0
272 MT 7648 . C T . PASS WP=1/0/0
273 MT 7690 . C T . PASS WP=1/0/0
274 MT 7708 . C G . PASS WP=0/1/0
275 MT 7780 . A G . PASS WP=0/0/1
276 MT 7788 . T A . PASS WP=1/0/0
277 MT 7828 . A G . PASS WP=1/1/1
278 MT 7872 . C T . PASS WP=0/1/0
279 MT 7888 . C G . PASS WP=0/1/0
280 MT 7891 . C G . PASS WP=0/0/1
281 MT 7903 . A G . PASS WP=0/0/1
282 MT 7985 . C T . PASS WP=0/1/0
283 MT 8072 . T A . PASS WP=0/0/1
284 MT 8093 . T C . PASS WP=0/0/1
285 MT 8097 . A C . PASS WP=0/0/1
286 MT 8116 . A G . PASS WP=0/0/1
287 MT 8140 . C T . PASS WP=0/0/1
288 MT 8147 . C G . PASS WP=1/0/0
289 MT 8167 . T C . PASS WP=0/0/1
290 MT 8211 . T C . PASS WP=1/0/0
291 MT 8246 . A G . PASS WP=0/1/0
292 MT 8251 . G A . PASS WP=0/0/1
293 MT 8308 . A G . PASS WP=0/1/0
294 MT 8311 . T C . PASS WP=0/0/1
295 MT 8312 . AGC A . PASS WP=0/0/1
296 MT 8322 . T A . PASS WP=1/0/0
297 MT 8363 . G A . PASS WP=0/1/0
298 MT 8371 . C A . PASS WP=1/1/1
299 MT 8397 . C T . PASS WP=0/1/0
300 MT 8407 . C T . PASS WP=0/0/1
301 MT 8410 . C T . PASS WP=0/1/0
302 MT 8423 . C G . PASS WP=0/1/0
303 MT 8436 . C A . PASS WP=1/0/0
304 MT 8458 . A C . PASS WP=0/0/1
305 MT 8486 . C T . PASS WP=0/1/0
306 MT 8543 . TC T . PASS WP=0/1/0
307 MT 8624 . C A . PASS WP=0/0/1
308 MT 8653 . A G . PASS WP=1/0/0
309 MT 8665 . C T . PASS WP=0/0/1
310 MT 8685 . C T . PASS WP=0/1/0
311 MT 8732 . C T . PASS WP=1/0/0
312 MT 8740 . CTAG C . PASS WP=0/0/1
313 MT 8772 . T TGC . PASS WP=0/0/1
314 MT 8793 . T C . PASS WP=1/0/0
315 MT 8826 . A C . PASS WP=0/1/0
316 MT 8834 . C T . PASS WP=0/1/0
317 MT 8835 . C CG . PASS WP=1/0/0
318 MT 8841 . C T . PASS WP=0/1/0
319 MT 8847 . C CG . PASS WP=0/1/0
320 MT 8857 . G A . PASS WP=0/1/0
321 MT 8870 . T G . PASS WP=1/0/0
322 MT 8948 . T C . PASS WP=0/0/1
323 MT 8977 . A G . PASS WP=0/0/1
324 MT 9028 . C G . PASS WP=0/1/0
325 MT 9048 . T C . PASS WP=0/1/0
326 MT 9072 . A G . PASS WP=1/0/0
327 MT 9076 . A G . PASS WP=0/1/0
328 MT 9111 . T C . PASS WP=0/0/1
329 MT 9112 . C A . PASS WP=1/0/0
330 MT 9133 . G A . PASS WP=0/0/1
331 MT 9150 . A G . PASS WP=0/1/0
332 MT 9154 . C CTC . PASS WP=1/0/0
333 MT 9233 . T C . PASS WP=1/0/0
334 MT 9244 . C T . PASS WP=0/1/0
335 MT 9316 . T C . PASS WP=1/0/0
336 MT 9329 . G A . PASS WP=0/0/1
337 MT 9337 . TA T . PASS WP=0/1/0
338 MT 9371 . C T . PASS WP=1/0/0
339 MT 9507 . T TCAAGTACTGA . PASS WP=0/1/0
340 MT 9537 . C T . PASS WP=1/0/0
341 MT 9540 . T C . PASS WP=0/1/0
342 MT 9573 . C CC . PASS WP=1/0/0
343 MT 9576 . C T . PASS WP=0/1/0
344 MT 9600 . C T . PASS WP=0/1/0
345 MT 9634 . C T . PASS WP=0/1/0
346 MT 9649 . ACC A . PASS WP=1/0/0
347 MT 9713 . G A . PASS WP=0/0/1
348 MT 9744 . G A . PASS WP=0/1/0
349 MT 9771 . T C . PASS WP=0/1/0
350 MT 9834 . A G . PASS WP=1/0/0
351 MT 9846 . T C . PASS WP=1/0/0
352 MT 9897 . C T . PASS WP=1/0/0
353 MT 9916 . C CC . PASS WP=0/1/0
354 MT 9919 . C T . PASS WP=1/0/0
355 MT 9942 . G T . PASS WP=0/1/0
356 MT 9954 . C T . PASS WP=1/0/0
357 MT 10004 . A G . PASS WP=0/0/1
358 MT 10011 . A G . PASS WP=0/0/1
359 MT 10022 . C T . PASS WP=1/0/0
360 MT 10027 . T TG . PASS WP=0/0/1
361 MT 10047 . C T . PASS WP=0/1/0
362 MT 10176 . G A . PASS WP=0/0/1
363 MT 10189 . T C . PASS WP=0/1/0
364 MT 10239 . A T . PASS WP=0/0/1
365 MT 10248 . T G . PASS WP=0/0/1
366 MT 10261 . A G . PASS WP=0/1/0
367 MT 10266 . G A . PASS WP=1/0/0
368 MT 10289 . A AAAT . PASS WP=0/0/1
369 MT 10296 . C T . PASS WP=1/0/0
370 MT 10416 . T C . PASS WP=1/1/0
371 MT 10418 . A C . PASS WP=0/1/0
372 MT 10478 . C T . PASS WP=0/1/0
373 MT 10492 . T C . PASS WP=0/0/1
374 MT 10568 . A G . PASS WP=0/0/1
375 MT 10569 . G A . PASS WP=0/1/0
376 MT 10588 . T C . PASS WP=1/0/0
377 MT 10636 . C A . PASS WP=0/1/0
378 MT 10668 . G A . PASS WP=0/0/1
379 MT 10706 . C T . PASS WP=1/0/0
380 MT 10752 . C T . PASS WP=0/0/1
381 MT 10771 . A G . PASS WP=1/0/0
382 MT 10793 . C T . PASS WP=0/1/0
383 MT 10835 . A C . PASS WP=0/0/1
384 MT 10847 . C T . PASS WP=0/1/0
385 MT 10859 . A T . PASS WP=0/0/1
386 MT 10868 . A C . PASS WP=0/1/0
387 MT 10895 . A AGA . PASS WP=1/0/0
388 MT 10903 . C A . PASS WP=1/0/0
389 MT 10915 . T C . PASS WP=0/0/1
390 MT 10934 . G A . PASS WP=1/0/0
391 MT 10946 . A C . PASS WP=1/0/0
392 MT 11017 . T C . PASS WP=1/0/0
393 MT 11054 . C T . PASS WP=1/0/0
394 MT 11063 . C CTG . PASS WP=1/0/0
395 MT 11072 . TCCT T . PASS WP=1/0/0
396 MT 11108 . A G . PASS WP=0/0/1
397 MT 11119 . C CTTGATTGCGG . PASS WP=0/1/0
398 MT 11136 . T C . PASS WP=1/0/0
399 MT 11154 . T C . PASS WP=0/0/1
400 MT 11158 . C G . PASS WP=0/0/1
401 MT 11195 . G A . PASS WP=0/0/1
402 MT 11204 . T C . PASS WP=0/1/0
403 MT 11215 . C T . PASS WP=0/1/0
404 MT 11268 . C G . PASS WP=0/0/1
405 MT 11269 . C T . PASS WP=0/0/1
406 MT 11271 . T C . PASS WP=0/0/1
407 MT 11285 . A G . PASS WP=0/0/1
408 MT 11320 . A G . PASS WP=0/0/1
409 MT 11389 . C T . PASS WP=0/0/1
410 MT 11412 . A AA . PASS WP=0/0/1
411 MT 11449 . A G . PASS WP=1/0/0
412 MT 11554 . C T . PASS WP=0/0/1
413 MT 11595 . A G . PASS WP=1/0/0
414 MT 11661 . T G . PASS WP=0/1/0
415 MT 11686 . C T . PASS WP=0/1/0
416 MT 11690 . G A . PASS WP=0/1/0
417 MT 11704 . C T . PASS WP=0/1/0
418 MT 11713 . C G . PASS WP=0/0/1
419 MT 11738 . T C . PASS WP=1/0/0
420 MT 11766 . G A . PASS WP=0/1/0
421 MT 11788 . C T . PASS WP=0/0/1
422 MT 11790 . T A . PASS WP=0/0/1
423 MT 11795 . C G . PASS WP=1/0/0
424 MT 11862 . C A . PASS WP=1/0/0
425 MT 11863 . C G . PASS WP=0/0/1
426 MT 11920 . C G . PASS WP=1/0/0
427 MT 11933 . A G . PASS WP=0/1/0
428 MT 11968 . A G . PASS WP=1/0/0
429 MT 12054 . G A . PASS WP=1/0/0
430 MT 12104 . C G . PASS WP=0/0/1
431 MT 12136 . T C . PASS WP=0/0/1
432 MT 12207 . G A . PASS WP=1/0/0
433 MT 12243 . TGT T . PASS WP=0/0/1
434 MT 12256 . G A . PASS WP=0/1/0
435 MT 12309 . A G . PASS WP=0/0/1
436 MT 12341 . C G . PASS WP=1/0/0
437 MT 12399 . C T . PASS WP=0/1/0
438 MT 12402 . C T . PASS WP=0/0/1
439 MT 12433 . C T . PASS WP=1/0/0
440 MT 12472 . A G . PASS WP=0/1/0
441 MT 12481 . T TAAC . PASS WP=0/1/0
442 MT 12500 . T G . PASS WP=0/1/0
443 MT 12576 . C T . PASS WP=0/1/0
444 MT 12577 . A G . PASS WP=1/0/0
445 MT 12783 . TATA T . PASS WP=0/0/1
446 MT 12789 . C T . PASS WP=0/0/1
447 MT 12790 . T C . PASS WP=0/0/1
448 MT 12793 . T A . PASS WP=0/0/1
449 MT 12814 . G A . PASS WP=1/0/0
450 MT 12907 . C T . PASS WP=0/0/1
451 MT 12910 . C T . PASS WP=0/1/0
452 MT 12929 . C A . PASS WP=0/0/1
453 MT 13002 . C T . PASS WP=0/1/0
454 MT 13003 . A G . PASS WP=1/0/0
455 MT 13016 . T C . PASS WP=1/0/0
456 MT 13017 . A G . PASS WP=1/0/0
457 MT 13024 . C T . PASS WP=0/1/0
458 MT 13094 . T A . PASS WP=1/0/0
459 MT 13103 . G GA . PASS WP=0/1/0
460 MT 13232 . A G . PASS WP=0/0/1
461 MT 13263 . A G . PASS WP=0/0/1
462 MT 13265 . T G . PASS WP=0/1/0
463 MT 13289 . G A . PASS WP=0/0/1
464 MT 13298 . A G . PASS WP=0/0/1
465 MT 13310 . CATT C . PASS WP=0/0/1
466 MT 13323 . C T . PASS WP=0/1/0
467 MT 13344 . AGCCA A . PASS WP=1/0/0
468 MT 13369 . T C . PASS WP=1/0/0
469 MT 13380 . C CGTC . PASS WP=0/1/0
470 MT 13384 . C A . PASS WP=0/0/1
471 MT 13386 . T C . PASS WP=1/0/0
472 MT 13411 . A G . PASS WP=0/1/0
473 MT 13462 . G A . PASS WP=0/1/0
474 MT 13488 . T A . PASS WP=1/0/0
475 MT 13493 . T G . PASS WP=0/1/0
476 MT 13501 . T TCGTCT . PASS WP=0/0/1
477 MT 13617 . T C . PASS WP=0/0/1
478 MT 13619 . T C . PASS WP=0/1/0
479 MT 13639 . CCT C . PASS WP=0/0/1
480 MT 13672 . AA A . PASS WP=0/0/1
481 MT 13758 . C T . PASS WP=0/0/1
482 MT 13763 . C A . PASS WP=0/0/1
483 MT 13787 . T G . PASS WP=0/0/1
484 MT 13808 . T A . PASS WP=0/0/1
485 MT 13894 . T C . PASS WP=0/1/0
486 MT 13941 . C T . PASS WP=0/1/0
487 MT 13943 . C A . PASS WP=0/1/0
488 MT 14005 . T C . PASS WP=0/1/0
489 MT 14008 . C T . PASS WP=1/0/0
490 MT 14060 . T G . PASS WP=1/0/0
491 MT 14067 . C T . PASS WP=1/0/0
492 MT 14114 . T TA . PASS WP=1/0/0
493 MT 14137 . C T . PASS WP=1/0/0
494 MT 14175 . C T . PASS WP=0/1/0
495 MT 14187 . C A . PASS WP=0/1/0
496 MT 14242 . A G . PASS WP=0/0/1
497 MT 14326 . T C . PASS WP=1/1/1
498 MT 14356 . C T . PASS WP=0/1/0
499 MT 14373 . C T . PASS WP=0/1/0
500 MT 14383 . C CTTCGTCC . PASS WP=1/0/0
501 MT 14405 . A G . PASS WP=0/0/1
502 MT 14410 . G A . PASS WP=0/1/0
503 MT 14460 . C T . PASS WP=0/1/0
504 MT 14492 . C G . PASS WP=1/0/0
505 MT 14520 . C A . PASS WP=1/0/0
506 MT 14522 . A G . PASS WP=0/1/0
507 MT 14595 . A G . PASS WP=0/1/0
508 MT 14612 . G A . PASS WP=1/0/0
509 MT 14653 . C T . PASS WP=0/0/1
510 MT 14665 . A G . PASS WP=1/0/0
511 MT 14673 . T C . PASS WP=1/0/0
512 MT 14699 . A G . PASS WP=0/1/0
513 MT 14703 . A T . PASS WP=1/0/0
514 MT 14727 . T C . PASS WP=0/1/0
515 MT 14740 . A G . PASS WP=0/0/1
516 MT 14807 . CT C . PASS WP=1/0/0
517 MT 14809 . C T . PASS WP=1/0/0
518 MT 14831 . G A . PASS WP=0/0/1
519 MT 14851 . A G . PASS WP=1/0/0
520 MT 14895 . T C . PASS WP=1/0/0
521 MT 14900 . G A . PASS WP=0/1/0
522 MT 14941 . A G . PASS WP=0/1/0
523 MT 15009 . C T . PASS WP=0/1/0
524 MT 15050 . C CAAGGCATAT . PASS WP=0/1/0
525 MT 15066 . T C . PASS WP=1/0/0
526 MT 15073 . C T . PASS WP=0/0/1
527 MT 15081 . C T . PASS WP=0/0/1
528 MT 15110 . GCAACT G . PASS WP=0/0/1
529 MT 15123 . C G . PASS WP=0/0/1
530 MT 15123 . C T . PASS WP=0/1/0
531 MT 15125 . G A . PASS WP=1/0/0
532 MT 15190 . C T . PASS WP=1/0/0
533 MT 15231 . A G . PASS WP=0/1/0
534 MT 15234 . G A . PASS WP=0/0/1
535 MT 15270 . T A . PASS WP=0/0/1
536 MT 15280 . C T . PASS WP=0/0/1
537 MT 15293 . T C . PASS WP=0/1/0
538 MT 15307 . C T . PASS WP=0/1/0
539 MT 15311 . A AT . PASS WP=0/1/0
540 MT 15317 . G A . PASS WP=0/1/0
541 MT 15324 . C T . PASS WP=1/0/0
542 MT 15375 . G A . PASS WP=1/0/0
543 MT 15427 . A G . PASS WP=1/0/0
544 MT 15477 . T C . PASS WP=1/0/0
545 MT 15527 . C G . PASS WP=1/0/0
546 MT 15565 . T C . PASS WP=1/0/0
547 MT 15569 . C T . PASS WP=0/1/0
548 MT 15596 . G GAGTCC . PASS WP=1/0/0
549 MT 15608 . C G . PASS WP=1/0/0
550 MT 15611 . G C . PASS WP=0/1/0
551 MT 15683 . CA C . PASS WP=0/1/0
552 MT 15748 . T C . PASS WP=0/0/1
553 MT 15762 . G A . PASS WP=1/0/0
554 MT 15807 . C T . PASS WP=1/0/0
555 MT 15822 . T G . PASS WP=0/0/1
556 MT 15833 . C A . PASS WP=0/0/1
557 MT 15847 . A G . PASS WP=0/1/0
558 MT 15957 . C T . PASS WP=1/0/0
559 MT 15968 . T C . PASS WP=1/0/0
560 MT 15997 . T C . PASS WP=0/0/1
561 MT 15999 . A C . PASS WP=0/0/1
562 MT 16062 . A G . PASS WP=0/1/0
563 MT 16067 . C T . PASS WP=0/0/1
564 MT 16088 . T C . PASS WP=0/0/1
565 MT 16116 . A G . PASS WP=1/0/0
566 MT 16132 . A G . PASS WP=0/1/0
567 MT 16201 . C A . PASS WP=1/0/0
568 MT 16203 . A T . PASS WP=0/1/0
569 MT 16217 . T C . PASS WP=1/0/0
570 MT 16228 . C T . PASS WP=1/0/0
571 MT 16266 . C T . PASS WP=0/1/0
572 MT 16274 . G A . PASS WP=0/0/1
573 MT 16277 . A C . PASS WP=0/0/1
574 MT 16295 . C T . PASS WP=0/0/1
575 MT 16301 . C T . PASS WP=0/1/0
576 MT 16308 . T C . PASS WP=1/1/1
577 MT 16345 . A T . PASS WP=1/0/0
578 MT 16390 . G A . PASS WP=1/0/0
579 MT 16409 . T C . PASS WP=0/1/0
580 MT 16413 . T C . PASS WP=0/1/0
581 MT 16555 . T C . PASS WP=0/0/1