Mercurial > repos > thondeboer > neat_genreads
diff test-data/chrMT-PE-VCF-BAM-panic.vcf @ 0:6e75a84e9338 draft
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
| author | thondeboer |
|---|---|
| date | Tue, 15 May 2018 02:39:53 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/chrMT-PE-VCF-BAM-panic.vcf Tue May 15 02:39:53 2018 -0400 @@ -0,0 +1,581 @@ +##fileformat=VCFv4.1 +##reference=chrMT.fa +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> +##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> +##INFO=<ID=VMX,Number=1,Type=String,Description="SNP is Missense in these Read Frames"> +##INFO=<ID=VNX,Number=1,Type=String,Description="SNP is Nonsense in these Read Frames"> +##INFO=<ID=VFX,Number=1,Type=String,Description="Indel Causes Frameshift"> +##INFO=<ID=WP,Number=A,Type=Integer,Description="NEAT-GenReads ploidy indicator"> +##ALT=<ID=DEL,Description="Deletion"> +##ALT=<ID=DUP,Description="Duplication"> +##ALT=<ID=INS,Description="Insertion of novel sequence"> +##ALT=<ID=INV,Description="Inversion"> +##ALT=<ID=CNV,Description="Copy number variable region"> +##ALT=<ID=TRANS,Description="Translocation"> +##ALT=<ID=INV-TRANS,Description="Inverted translocation"> +#CHROM POS ID REF ALT QUAL FILTER INFO +MT 550 . A G . PASS WP=0/1/0 +MT 553 . C CGAGGC . PASS WP=0/0/1 +MT 622 . G T . PASS WP=0/1/0 +MT 626 . G A . PASS WP=0/0/1 +MT 627 . G A . PASS WP=0/0/1 +MT 669 . T C . PASS WP=1/0/0 +MT 677 . CTCT C . PASS WP=0/0/1 +MT 689 . T C . PASS WP=0/1/0 +MT 691 . A T . PASS WP=0/0/1 +MT 702 . C T . PASS WP=0/0/1 +MT 798 . C T . PASS WP=0/0/1 +MT 821 . T G . PASS WP=1/0/0 +MT 858 . C T . PASS WP=1/0/0 +MT 866 . A G . PASS WP=0/0/1 +MT 915 . C G . PASS WP=0/0/1 +MT 980 . T A . PASS WP=1/0/0 +MT 1000 . T A . PASS WP=1/0/0 +MT 1008 . A G . PASS WP=0/1/0 +MT 1041 . A G . PASS WP=0/1/0 +MT 1072 . G C . PASS WP=1/0/0 +MT 1082 . A G . PASS WP=1/0/0 +MT 1099 . C A . PASS WP=0/0/1 +MT 1116 . A G . PASS WP=0/0/1 +MT 1124 . A G . PASS WP=1/0/0 +MT 1136 . C G . PASS WP=0/1/0 +MT 1210 . T TC . PASS WP=0/0/1 +MT 1224 . C G . PASS WP=0/0/1 +MT 1250 . C CTTCTC . PASS WP=1/0/0 +MT 1292 . A T . PASS WP=1/0/0 +MT 1314 . C G . PASS WP=0/0/1 +MT 1330 . C CG . PASS WP=0/0/1 +MT 1330 . C T . PASS WP=0/1/0 +MT 1334 . G A . PASS WP=1/0/0 +MT 1361 . G T . PASS WP=0/1/0 +MT 1378 . C T . PASS WP=1/0/0 +MT 1400 . T G . PASS WP=1/0/0 +MT 1404 . A G . PASS WP=1/0/0 +MT 1423 . A G . PASS WP=0/1/0 +MT 1432 . T TCATTGTTT . PASS WP=0/0/1 +MT 1453 . A C . PASS WP=0/1/0 +MT 1456 . T A . PASS WP=0/1/0 +MT 1516 . G A . PASS WP=1/0/0 +MT 1528 . A G . PASS WP=1/0/0 +MT 1544 . A ACGGGA . PASS WP=0/0/1 +MT 1633 . T C . PASS WP=0/1/0 +MT 1635 . C G . PASS WP=0/1/0 +MT 1683 . C CA . PASS WP=0/0/1 +MT 1725 . C T . PASS WP=0/1/0 +MT 1776 . G A . PASS WP=0/1/0 +MT 1792 . G GT . PASS WP=0/0/1 +MT 1797 . G A . PASS WP=0/1/0 +MT 1802 . A C . PASS WP=1/0/0 +MT 1878 . T C . PASS WP=0/1/0 +MT 1879 . G C . PASS WP=1/0/0 +MT 1909 . A G . PASS WP=0/0/1 +MT 1937 . A AC . PASS WP=0/0/1 +MT 1982 . G A . PASS WP=0/1/0 +MT 1984 . A G . PASS WP=0/0/1 +MT 1991 . A AATGCT . PASS WP=0/0/1 +MT 2027 . A T . PASS WP=1/0/0 +MT 2034 . A G . PASS WP=1/0/0 +MT 2075 . T C . PASS WP=1/0/1 +MT 2120 . GGAC G . PASS WP=0/1/0 +MT 2135 . A G . PASS WP=0/1/0 +MT 2157 . T C . PASS WP=0/0/1 +MT 2177 . T G . PASS WP=0/0/1 +MT 2225 . C T . PASS WP=0/0/1 +MT 2229 . A G . PASS WP=0/0/1 +MT 2312 . AACAT A . PASS WP=1/0/0 +MT 2361 . G A . PASS WP=0/1/0 +MT 2363 . A G . PASS WP=0/1/0 +MT 2384 . A G . PASS WP=1/1/1 +MT 2402 . A G . PASS WP=1/0/0 +MT 2494 . C T . PASS WP=0/1/0 +MT 2497 . T C . PASS WP=1/0/0 +MT 2510 . T G . PASS WP=0/1/0 +MT 2528 . G GATAAACT . PASS WP=1/0/0 +MT 2530 . A G . PASS WP=0/0/1 +MT 2554 . A G . PASS WP=0/1/0 +MT 2564 . A T . PASS WP=1/0/0 +MT 2626 . T TT . PASS WP=0/0/1 +MT 2636 . G A . PASS WP=0/1/0 +MT 2646 . G A . PASS WP=1/0/0 +MT 2663 . C G . PASS WP=1/0/0 +MT 2673 . G A . PASS WP=0/0/1 +MT 2717 . A G . PASS WP=1/0/0 +MT 2737 . T C . PASS WP=0/0/1 +MT 2739 . T C . PASS WP=0/0/1 +MT 2756 . C T . PASS WP=1/0/0 +MT 2846 . G T . PASS WP=0/1/0 +MT 2851 . A G . PASS WP=0/0/1 +MT 2889 . C A . PASS WP=1/0/0 +MT 2938 . A AG . PASS WP=1/0/0 +MT 2947 . TC T . PASS WP=1/0/0 +MT 2979 . T C . PASS WP=1/0/0 +MT 3010 . G A . PASS WP=1/0/0 +MT 3011 . A G . PASS WP=0/0/1 +MT 3043 . C T . PASS WP=1/0/0 +MT 3066 . C CA . PASS WP=0/0/1 +MT 3104 . T A . PASS WP=0/0/1 +MT 3114 . T A . PASS WP=0/1/0 +MT 3201 . A G . PASS WP=1/0/0 +MT 3253 . T C . PASS WP=0/0/1 +MT 3288 . A G . PASS WP=0/1/0 +MT 3301 . A T . PASS WP=0/1/0 +MT 3325 . C G . PASS WP=0/1/0 +MT 3363 . C T . PASS WP=0/1/0 +MT 3375 . C T . PASS WP=0/0/1 +MT 3385 . A G . PASS WP=0/1/0 +MT 3416 . CCAACG C . PASS WP=0/0/1 +MT 3460 . G A . PASS WP=0/1/0 +MT 3539 . C CACA . PASS WP=0/1/0 +MT 3544 . A G . PASS WP=0/1/0 +MT 3647 . A G . PASS WP=1/0/0 +MT 3809 . C A . PASS WP=1/0/0 +MT 3901 . G GT . PASS WP=1/0/0 +MT 3928 . G A . PASS WP=0/0/1 +MT 3929 . TC T . PASS WP=1/0/0 +MT 3955 . G A . PASS WP=0/1/0 +MT 3958 . G A . PASS WP=0/0/1 +MT 3967 . G A . PASS WP=1/0/0 +MT 3987 . A T . PASS WP=0/1/0 +MT 3998 . T C . PASS WP=0/1/0 +MT 4114 . T C . PASS WP=1/0/0 +MT 4121 . G C . PASS WP=0/1/0 +MT 4123 . A G . PASS WP=0/1/0 +MT 4150 . T A . PASS WP=1/0/0 +MT 4171 . C T . PASS WP=0/1/0 +MT 4178 . A G . PASS WP=0/0/1 +MT 4201 . G A . PASS WP=1/0/0 +MT 4225 . A G . PASS WP=1/0/0 +MT 4251 . C CT . PASS WP=0/1/0 +MT 4276 . A AA . PASS WP=0/1/0 +MT 4317 . A G . PASS WP=1/0/0 +MT 4353 . T C . PASS WP=1/0/0 +MT 4359 . A C . PASS WP=1/0/0 +MT 4442 . A G . PASS WP=1/0/0 +MT 4448 . T A . PASS WP=0/0/1 +MT 4454 . T G . PASS WP=1/0/0 +MT 4459 . T A . PASS WP=1/0/0 +MT 4460 . T C . PASS WP=0/1/0 +MT 4468 . T G . PASS WP=0/0/1 +MT 4469 . A G . PASS WP=1/0/0 +MT 4559 . A G . PASS WP=1/0/0 +MT 4569 . G A . PASS WP=1/0/0 +MT 4572 . A ACG . PASS WP=1/0/0 +MT 4587 . T A . PASS WP=0/1/0 +MT 4589 . T C . PASS WP=1/0/0 +MT 4627 . C T . PASS WP=1/0/1 +MT 4653 . A G . PASS WP=0/1/0 +MT 4654 . C T . PASS WP=0/1/0 +MT 4669 . C T . PASS WP=0/1/0 +MT 4684 . T C . PASS WP=1/0/0 +MT 4719 . T TCCGTT . PASS WP=0/0/1 +MT 4771 . C T . PASS WP=1/0/0 +MT 4802 . T C . PASS WP=0/1/0 +MT 4803 . C G . PASS WP=1/0/0 +MT 4811 . A G . PASS WP=0/1/0 +MT 4812 . G A . PASS WP=0/0/1 +MT 4845 . T C . PASS WP=1/0/0 +MT 4851 . C T . PASS WP=1/0/0 +MT 4853 . G A . PASS WP=1/0/0 +MT 4867 . G GC . PASS WP=0/1/0 +MT 4869 . C T . PASS WP=0/1/0 +MT 4908 . C T . PASS WP=1/0/0 +MT 4977 . T C . PASS WP=0/1/0 +MT 4995 . C T . PASS WP=0/0/1 +MT 4999 . A T . PASS WP=1/0/0 +MT 5015 . C A . PASS WP=0/1/0 +MT 5018 . A T . PASS WP=0/0/1 +MT 5112 . G A . PASS WP=1/0/0 +MT 5133 . A G . PASS WP=0/1/0 +MT 5382 . CT C . PASS WP=0/0/1 +MT 5484 . A G . PASS WP=0/1/0 +MT 5497 . T C . PASS WP=0/0/1 +MT 5505 . A AAGA . PASS WP=0/1/0 +MT 5506 . T A . PASS WP=1/0/0 +MT 5556 . G A . PASS WP=1/0/0 +MT 5632 . C A . PASS WP=1/0/0 +MT 5639 . A G . PASS WP=1/0/0 +MT 5672 . T C . PASS WP=0/0/1 +MT 5694 . A G . PASS WP=0/1/0 +MT 5696 . C T . PASS WP=0/1/0 +MT 5860 . T A . PASS WP=0/0/1 +MT 5898 . C T . PASS WP=1/0/0 +MT 5901 . C T . PASS WP=1/0/0 +MT 5912 . C T . PASS WP=0/0/1 +MT 5914 . A AC . PASS WP=1/0/0 +MT 5930 . T C . PASS WP=0/0/1 +MT 5932 . C G . PASS WP=0/0/1 +MT 5969 . C A . PASS WP=0/0/1 +MT 5988 . C T . PASS WP=0/0/1 +MT 6079 . C A . PASS WP=0/1/0 +MT 6110 . A G . PASS WP=1/0/0 +MT 6122 . C T . PASS WP=0/1/0 +MT 6128 . C T . PASS WP=1/1/1 +MT 6141 . A T . PASS WP=0/1/0 +MT 6229 . T C . PASS WP=1/0/0 +MT 6247 . C A . PASS WP=1/0/0 +MT 6250 . C T . PASS WP=0/1/0 +MT 6271 . G T . PASS WP=0/1/0 +MT 6310 . A AA . PASS WP=1/0/0 +MT 6334 . A T . PASS WP=0/0/1 +MT 6339 . A G . PASS WP=0/0/1 +MT 6350 . C T . PASS WP=0/1/0 +MT 6362 . A AC . PASS WP=0/1/0 +MT 6408 . A C . PASS WP=0/0/1 +MT 6417 . A G . PASS WP=1/0/0 +MT 6431 . A G . PASS WP=0/1/0 +MT 6432 . A G . PASS WP=1/0/0 +MT 6463 . C T . PASS WP=1/0/0 +MT 6473 . CAC C . PASS WP=0/1/0 +MT 6524 . T C . PASS WP=0/0/1 +MT 6539 . C T . PASS WP=0/1/0 +MT 6554 . C T . PASS WP=1/0/0 +MT 6623 . C T . PASS WP=0/1/0 +MT 6624 . C T . PASS WP=0/0/1 +MT 6625 . C G . PASS WP=0/0/1 +MT 6628 . A G . PASS WP=1/0/0 +MT 6634 . A G . PASS WP=0/1/0 +MT 6647 . A G . PASS WP=1/0/0 +MT 6663 . A G . PASS WP=0/1/0 +MT 6708 . G A . PASS WP=1/0/0 +MT 6756 . T TGGTCAAGCTG . PASS WP=0/0/1 +MT 6780 . T C . PASS WP=1/0/0 +MT 6816 . T C . PASS WP=0/1/0 +MT 6820 . C T . PASS WP=1/0/0 +MT 6861 . G GAG . PASS WP=0/1/0 +MT 6941 . T C . PASS WP=0/0/1 +MT 6956 . T C . PASS WP=1/0/0 +MT 6967 . G A . PASS WP=0/0/1 +MT 7034 . C G . PASS WP=0/0/1 +MT 7100 . A G . PASS WP=0/0/1 +MT 7120 . A G . PASS WP=0/0/1 +MT 7124 . A G . PASS WP=0/0/1 +MT 7205 . C T . PASS WP=0/1/0 +MT 7262 . A ACTTAT . PASS WP=0/0/1 +MT 7270 . T C . PASS WP=0/1/0 +MT 7314 . A G . PASS WP=1/0/0 +MT 7320 . T C . PASS WP=0/1/0 +MT 7362 . G GTT . PASS WP=0/0/1 +MT 7379 . G A . PASS WP=1/0/0 +MT 7462 . C CAG . PASS WP=1/0/0 +MT 7479 . G GA . PASS WP=1/0/0 +MT 7493 . C A . PASS WP=1/0/0 +MT 7511 . T TAC . PASS WP=1/1/1 +MT 7527 . G A . PASS WP=1/0/0 +MT 7535 . A G . PASS WP=0/0/1 +MT 7540 . A G . PASS WP=1/1/1 +MT 7583 . T C . PASS WP=0/0/1 +MT 7588 . G C . PASS WP=1/0/0 +MT 7610 . C T . PASS WP=0/0/1 +MT 7614 . A AA . PASS WP=1/0/0 +MT 7622 . A C . PASS WP=0/0/1 +MT 7642 . G A . PASS WP=0/1/0 +MT 7648 . C T . PASS WP=1/0/0 +MT 7690 . C T . PASS WP=1/0/0 +MT 7708 . C G . PASS WP=0/1/0 +MT 7780 . A G . PASS WP=0/0/1 +MT 7788 . T A . PASS WP=1/0/0 +MT 7828 . A G . PASS WP=1/1/1 +MT 7872 . C T . PASS WP=0/1/0 +MT 7888 . C G . PASS WP=0/1/0 +MT 7891 . C G . PASS WP=0/0/1 +MT 7903 . A G . PASS WP=0/0/1 +MT 7985 . C T . PASS WP=0/1/0 +MT 8072 . T A . PASS WP=0/0/1 +MT 8093 . T C . PASS WP=0/0/1 +MT 8097 . A C . PASS WP=0/0/1 +MT 8116 . A G . PASS WP=0/0/1 +MT 8140 . C T . PASS WP=0/0/1 +MT 8147 . C G . PASS WP=1/0/0 +MT 8167 . T C . PASS WP=0/0/1 +MT 8211 . T C . PASS WP=1/0/0 +MT 8246 . A G . PASS WP=0/1/0 +MT 8251 . G A . PASS WP=0/0/1 +MT 8308 . A G . PASS WP=0/1/0 +MT 8311 . T C . PASS WP=0/0/1 +MT 8312 . AGC A . PASS WP=0/0/1 +MT 8322 . T A . PASS WP=1/0/0 +MT 8363 . G A . PASS WP=0/1/0 +MT 8371 . C A . PASS WP=1/1/1 +MT 8397 . C T . PASS WP=0/1/0 +MT 8407 . C T . PASS WP=0/0/1 +MT 8410 . C T . PASS WP=0/1/0 +MT 8423 . C G . PASS WP=0/1/0 +MT 8436 . C A . PASS WP=1/0/0 +MT 8458 . A C . PASS WP=0/0/1 +MT 8486 . C T . PASS WP=0/1/0 +MT 8543 . TC T . PASS WP=0/1/0 +MT 8624 . C A . PASS WP=0/0/1 +MT 8653 . A G . PASS WP=1/0/0 +MT 8665 . C T . PASS WP=0/0/1 +MT 8685 . C T . PASS WP=0/1/0 +MT 8732 . C T . PASS WP=1/0/0 +MT 8740 . CTAG C . PASS WP=0/0/1 +MT 8772 . T TGC . PASS WP=0/0/1 +MT 8793 . T C . PASS WP=1/0/0 +MT 8826 . A C . PASS WP=0/1/0 +MT 8834 . C T . PASS WP=0/1/0 +MT 8835 . C CG . PASS WP=1/0/0 +MT 8841 . C T . PASS WP=0/1/0 +MT 8847 . C CG . PASS WP=0/1/0 +MT 8857 . G A . PASS WP=0/1/0 +MT 8870 . T G . PASS WP=1/0/0 +MT 8948 . T C . PASS WP=0/0/1 +MT 8977 . A G . PASS WP=0/0/1 +MT 9028 . C G . PASS WP=0/1/0 +MT 9048 . T C . PASS WP=0/1/0 +MT 9072 . A G . PASS WP=1/0/0 +MT 9076 . A G . PASS WP=0/1/0 +MT 9111 . T C . PASS WP=0/0/1 +MT 9112 . C A . PASS WP=1/0/0 +MT 9133 . G A . PASS WP=0/0/1 +MT 9150 . A G . PASS WP=0/1/0 +MT 9154 . C CTC . PASS WP=1/0/0 +MT 9233 . T C . PASS WP=1/0/0 +MT 9244 . C T . PASS WP=0/1/0 +MT 9316 . T C . PASS WP=1/0/0 +MT 9329 . G A . PASS WP=0/0/1 +MT 9337 . TA T . PASS WP=0/1/0 +MT 9371 . C T . PASS WP=1/0/0 +MT 9507 . T TCAAGTACTGA . PASS WP=0/1/0 +MT 9537 . C T . PASS WP=1/0/0 +MT 9540 . T C . PASS WP=0/1/0 +MT 9573 . C CC . PASS WP=1/0/0 +MT 9576 . C T . PASS WP=0/1/0 +MT 9600 . C T . PASS WP=0/1/0 +MT 9634 . C T . PASS WP=0/1/0 +MT 9649 . ACC A . PASS WP=1/0/0 +MT 9713 . G A . PASS WP=0/0/1 +MT 9744 . G A . PASS WP=0/1/0 +MT 9771 . T C . PASS WP=0/1/0 +MT 9834 . A G . PASS WP=1/0/0 +MT 9846 . T C . PASS WP=1/0/0 +MT 9897 . C T . PASS WP=1/0/0 +MT 9916 . C CC . PASS WP=0/1/0 +MT 9919 . C T . PASS WP=1/0/0 +MT 9942 . G T . PASS WP=0/1/0 +MT 9954 . C T . PASS WP=1/0/0 +MT 10004 . A G . PASS WP=0/0/1 +MT 10011 . A G . PASS WP=0/0/1 +MT 10022 . C T . PASS WP=1/0/0 +MT 10027 . T TG . PASS WP=0/0/1 +MT 10047 . C T . PASS WP=0/1/0 +MT 10176 . G A . PASS WP=0/0/1 +MT 10189 . T C . PASS WP=0/1/0 +MT 10239 . A T . PASS WP=0/0/1 +MT 10248 . T G . PASS WP=0/0/1 +MT 10261 . A G . PASS WP=0/1/0 +MT 10266 . G A . PASS WP=1/0/0 +MT 10289 . A AAAT . PASS WP=0/0/1 +MT 10296 . C T . PASS WP=1/0/0 +MT 10416 . T C . PASS WP=1/1/0 +MT 10418 . A C . PASS WP=0/1/0 +MT 10478 . C T . PASS WP=0/1/0 +MT 10492 . T C . PASS WP=0/0/1 +MT 10568 . A G . PASS WP=0/0/1 +MT 10569 . G A . PASS WP=0/1/0 +MT 10588 . T C . PASS WP=1/0/0 +MT 10636 . C A . PASS WP=0/1/0 +MT 10668 . G A . PASS WP=0/0/1 +MT 10706 . C T . PASS WP=1/0/0 +MT 10752 . C T . PASS WP=0/0/1 +MT 10771 . A G . PASS WP=1/0/0 +MT 10793 . C T . PASS WP=0/1/0 +MT 10835 . A C . PASS WP=0/0/1 +MT 10847 . C T . PASS WP=0/1/0 +MT 10859 . A T . PASS WP=0/0/1 +MT 10868 . A C . PASS WP=0/1/0 +MT 10895 . A AGA . PASS WP=1/0/0 +MT 10903 . C A . PASS WP=1/0/0 +MT 10915 . T C . PASS WP=0/0/1 +MT 10934 . G A . PASS WP=1/0/0 +MT 10946 . A C . PASS WP=1/0/0 +MT 11017 . T C . PASS WP=1/0/0 +MT 11054 . C T . PASS WP=1/0/0 +MT 11063 . C CTG . PASS WP=1/0/0 +MT 11072 . TCCT T . PASS WP=1/0/0 +MT 11108 . A G . PASS WP=0/0/1 +MT 11119 . C CTTGATTGCGG . PASS WP=0/1/0 +MT 11136 . T C . PASS WP=1/0/0 +MT 11154 . T C . PASS WP=0/0/1 +MT 11158 . C G . PASS WP=0/0/1 +MT 11195 . G A . PASS WP=0/0/1 +MT 11204 . T C . PASS WP=0/1/0 +MT 11215 . C T . PASS WP=0/1/0 +MT 11268 . C G . PASS WP=0/0/1 +MT 11269 . C T . PASS WP=0/0/1 +MT 11271 . T C . PASS WP=0/0/1 +MT 11285 . A G . PASS WP=0/0/1 +MT 11320 . A G . PASS WP=0/0/1 +MT 11389 . C T . PASS WP=0/0/1 +MT 11412 . A AA . PASS WP=0/0/1 +MT 11449 . A G . PASS WP=1/0/0 +MT 11554 . C T . PASS WP=0/0/1 +MT 11595 . A G . PASS WP=1/0/0 +MT 11661 . T G . PASS WP=0/1/0 +MT 11686 . C T . PASS WP=0/1/0 +MT 11690 . G A . PASS WP=0/1/0 +MT 11704 . C T . PASS WP=0/1/0 +MT 11713 . C G . PASS WP=0/0/1 +MT 11738 . T C . PASS WP=1/0/0 +MT 11766 . G A . PASS WP=0/1/0 +MT 11788 . C T . PASS WP=0/0/1 +MT 11790 . T A . PASS WP=0/0/1 +MT 11795 . C G . PASS WP=1/0/0 +MT 11862 . C A . PASS WP=1/0/0 +MT 11863 . C G . PASS WP=0/0/1 +MT 11920 . C G . PASS WP=1/0/0 +MT 11933 . A G . PASS WP=0/1/0 +MT 11968 . A G . PASS WP=1/0/0 +MT 12054 . G A . PASS WP=1/0/0 +MT 12104 . C G . PASS WP=0/0/1 +MT 12136 . T C . PASS WP=0/0/1 +MT 12207 . G A . PASS WP=1/0/0 +MT 12243 . TGT T . PASS WP=0/0/1 +MT 12256 . G A . PASS WP=0/1/0 +MT 12309 . A G . PASS WP=0/0/1 +MT 12341 . C G . PASS WP=1/0/0 +MT 12399 . C T . PASS WP=0/1/0 +MT 12402 . C T . PASS WP=0/0/1 +MT 12433 . C T . PASS WP=1/0/0 +MT 12472 . A G . PASS WP=0/1/0 +MT 12481 . T TAAC . PASS WP=0/1/0 +MT 12500 . T G . PASS WP=0/1/0 +MT 12576 . C T . PASS WP=0/1/0 +MT 12577 . A G . PASS WP=1/0/0 +MT 12783 . TATA T . PASS WP=0/0/1 +MT 12789 . C T . PASS WP=0/0/1 +MT 12790 . T C . PASS WP=0/0/1 +MT 12793 . T A . PASS WP=0/0/1 +MT 12814 . G A . PASS WP=1/0/0 +MT 12907 . C T . PASS WP=0/0/1 +MT 12910 . C T . PASS WP=0/1/0 +MT 12929 . C A . PASS WP=0/0/1 +MT 13002 . C T . PASS WP=0/1/0 +MT 13003 . A G . PASS WP=1/0/0 +MT 13016 . T C . PASS WP=1/0/0 +MT 13017 . A G . PASS WP=1/0/0 +MT 13024 . C T . PASS WP=0/1/0 +MT 13094 . T A . PASS WP=1/0/0 +MT 13103 . G GA . PASS WP=0/1/0 +MT 13232 . A G . PASS WP=0/0/1 +MT 13263 . A G . PASS WP=0/0/1 +MT 13265 . T G . PASS WP=0/1/0 +MT 13289 . G A . PASS WP=0/0/1 +MT 13298 . A G . PASS WP=0/0/1 +MT 13310 . CATT C . PASS WP=0/0/1 +MT 13323 . C T . PASS WP=0/1/0 +MT 13344 . AGCCA A . PASS WP=1/0/0 +MT 13369 . T C . PASS WP=1/0/0 +MT 13380 . C CGTC . PASS WP=0/1/0 +MT 13384 . C A . PASS WP=0/0/1 +MT 13386 . T C . PASS WP=1/0/0 +MT 13411 . A G . PASS WP=0/1/0 +MT 13462 . G A . PASS WP=0/1/0 +MT 13488 . T A . PASS WP=1/0/0 +MT 13493 . T G . PASS WP=0/1/0 +MT 13501 . T TCGTCT . PASS WP=0/0/1 +MT 13617 . T C . PASS WP=0/0/1 +MT 13619 . T C . PASS WP=0/1/0 +MT 13639 . CCT C . PASS WP=0/0/1 +MT 13672 . AA A . PASS WP=0/0/1 +MT 13758 . C T . PASS WP=0/0/1 +MT 13763 . C A . PASS WP=0/0/1 +MT 13787 . T G . PASS WP=0/0/1 +MT 13808 . T A . PASS WP=0/0/1 +MT 13894 . T C . PASS WP=0/1/0 +MT 13941 . C T . PASS WP=0/1/0 +MT 13943 . C A . PASS WP=0/1/0 +MT 14005 . T C . PASS WP=0/1/0 +MT 14008 . C T . PASS WP=1/0/0 +MT 14060 . T G . PASS WP=1/0/0 +MT 14067 . C T . PASS WP=1/0/0 +MT 14114 . T TA . PASS WP=1/0/0 +MT 14137 . C T . PASS WP=1/0/0 +MT 14175 . C T . PASS WP=0/1/0 +MT 14187 . C A . PASS WP=0/1/0 +MT 14242 . A G . PASS WP=0/0/1 +MT 14326 . T C . PASS WP=1/1/1 +MT 14356 . C T . PASS WP=0/1/0 +MT 14373 . C T . PASS WP=0/1/0 +MT 14383 . C CTTCGTCC . PASS WP=1/0/0 +MT 14405 . A G . PASS WP=0/0/1 +MT 14410 . G A . PASS WP=0/1/0 +MT 14460 . C T . PASS WP=0/1/0 +MT 14492 . C G . PASS WP=1/0/0 +MT 14520 . C A . PASS WP=1/0/0 +MT 14522 . A G . PASS WP=0/1/0 +MT 14595 . A G . PASS WP=0/1/0 +MT 14612 . G A . PASS WP=1/0/0 +MT 14653 . C T . PASS WP=0/0/1 +MT 14665 . A G . PASS WP=1/0/0 +MT 14673 . T C . PASS WP=1/0/0 +MT 14699 . A G . PASS WP=0/1/0 +MT 14703 . A T . PASS WP=1/0/0 +MT 14727 . T C . PASS WP=0/1/0 +MT 14740 . A G . PASS WP=0/0/1 +MT 14807 . CT C . PASS WP=1/0/0 +MT 14809 . C T . PASS WP=1/0/0 +MT 14831 . G A . PASS WP=0/0/1 +MT 14851 . A G . PASS WP=1/0/0 +MT 14895 . T C . PASS WP=1/0/0 +MT 14900 . G A . PASS WP=0/1/0 +MT 14941 . A G . PASS WP=0/1/0 +MT 15009 . C T . PASS WP=0/1/0 +MT 15050 . C CAAGGCATAT . PASS WP=0/1/0 +MT 15066 . T C . PASS WP=1/0/0 +MT 15073 . C T . PASS WP=0/0/1 +MT 15081 . C T . PASS WP=0/0/1 +MT 15110 . GCAACT G . PASS WP=0/0/1 +MT 15123 . C G . PASS WP=0/0/1 +MT 15123 . C T . PASS WP=0/1/0 +MT 15125 . G A . PASS WP=1/0/0 +MT 15190 . C T . PASS WP=1/0/0 +MT 15231 . A G . PASS WP=0/1/0 +MT 15234 . G A . PASS WP=0/0/1 +MT 15270 . T A . PASS WP=0/0/1 +MT 15280 . C T . PASS WP=0/0/1 +MT 15293 . T C . PASS WP=0/1/0 +MT 15307 . C T . PASS WP=0/1/0 +MT 15311 . A AT . PASS WP=0/1/0 +MT 15317 . G A . PASS WP=0/1/0 +MT 15324 . C T . PASS WP=1/0/0 +MT 15375 . G A . PASS WP=1/0/0 +MT 15427 . A G . PASS WP=1/0/0 +MT 15477 . T C . PASS WP=1/0/0 +MT 15527 . C G . PASS WP=1/0/0 +MT 15565 . T C . PASS WP=1/0/0 +MT 15569 . C T . PASS WP=0/1/0 +MT 15596 . G GAGTCC . PASS WP=1/0/0 +MT 15608 . C G . PASS WP=1/0/0 +MT 15611 . G C . PASS WP=0/1/0 +MT 15683 . CA C . PASS WP=0/1/0 +MT 15748 . T C . PASS WP=0/0/1 +MT 15762 . G A . PASS WP=1/0/0 +MT 15807 . C T . PASS WP=1/0/0 +MT 15822 . T G . PASS WP=0/0/1 +MT 15833 . C A . PASS WP=0/0/1 +MT 15847 . A G . PASS WP=0/1/0 +MT 15957 . C T . PASS WP=1/0/0 +MT 15968 . T C . PASS WP=1/0/0 +MT 15997 . T C . PASS WP=0/0/1 +MT 15999 . A C . PASS WP=0/0/1 +MT 16062 . A G . PASS WP=0/1/0 +MT 16067 . C T . PASS WP=0/0/1 +MT 16088 . T C . PASS WP=0/0/1 +MT 16116 . A G . PASS WP=1/0/0 +MT 16132 . A G . PASS WP=0/1/0 +MT 16201 . C A . PASS WP=1/0/0 +MT 16203 . A T . PASS WP=0/1/0 +MT 16217 . T C . PASS WP=1/0/0 +MT 16228 . C T . PASS WP=1/0/0 +MT 16266 . C T . PASS WP=0/1/0 +MT 16274 . G A . PASS WP=0/0/1 +MT 16277 . A C . PASS WP=0/0/1 +MT 16295 . C T . PASS WP=0/0/1 +MT 16301 . C T . PASS WP=0/1/0 +MT 16308 . T C . PASS WP=1/1/1 +MT 16345 . A T . PASS WP=1/0/0 +MT 16390 . G A . PASS WP=1/0/0 +MT 16409 . T C . PASS WP=0/1/0 +MT 16413 . T C . PASS WP=0/1/0 +MT 16555 . T C . PASS WP=0/0/1