Mercurial > repos > thondeboer > neat_genreads
diff test-data/chrMT-PE-VCF-BAM-gz.vcf @ 0:6e75a84e9338 draft
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
| author | thondeboer |
|---|---|
| date | Tue, 15 May 2018 02:39:53 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/chrMT-PE-VCF-BAM-gz.vcf Tue May 15 02:39:53 2018 -0400 @@ -0,0 +1,32 @@ +##fileformat=VCFv4.1 +##reference=chrMT.fa +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> +##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> +##INFO=<ID=VMX,Number=1,Type=String,Description="SNP is Missense in these Read Frames"> +##INFO=<ID=VNX,Number=1,Type=String,Description="SNP is Nonsense in these Read Frames"> +##INFO=<ID=VFX,Number=1,Type=String,Description="Indel Causes Frameshift"> +##INFO=<ID=WP,Number=A,Type=Integer,Description="NEAT-GenReads ploidy indicator"> +##ALT=<ID=DEL,Description="Deletion"> +##ALT=<ID=DUP,Description="Duplication"> +##ALT=<ID=INS,Description="Insertion of novel sequence"> +##ALT=<ID=INV,Description="Inversion"> +##ALT=<ID=CNV,Description="Copy number variable region"> +##ALT=<ID=TRANS,Description="Translocation"> +##ALT=<ID=INV-TRANS,Description="Inverted translocation"> +#CHROM POS ID REF ALT QUAL FILTER INFO +MT 335 . A AATTA . PASS WP=0/1 +MT 4078 . T C . PASS WP=0/1 +MT 4682 . A G . PASS WP=0/1 +MT 5713 . C T . PASS WP=0/1 +MT 6503 . A G . PASS WP=0/1 +MT 7425 . C T . PASS WP=1/0 +MT 7778 . T C . PASS WP=1/0 +MT 8471 . C T . PASS WP=1/0 +MT 8776 . C T . PASS WP=0/1 +MT 10750 . A G . PASS WP=0/1 +MT 11273 . G A . PASS WP=0/1 +MT 11743 . C T . PASS WP=1/0 +MT 13132 . C CT . PASS WP=0/1 +MT 13273 . A G . PASS WP=1/0 +MT 13804 . G A . PASS WP=0/1 +MT 14067 . C T . PASS WP=0/1