Mercurial > repos > thondeboer > neat_genreads
view test-data/chrMT-PE-VCF-BAM-gz.vcf @ 10:7d10b55965c9 draft default tip
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
| author | thondeboer |
|---|---|
| date | Wed, 16 May 2018 17:02:51 -0400 |
| parents | 6e75a84e9338 |
| children |
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##fileformat=VCFv4.1 ##reference=chrMT.fa ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> ##INFO=<ID=VMX,Number=1,Type=String,Description="SNP is Missense in these Read Frames"> ##INFO=<ID=VNX,Number=1,Type=String,Description="SNP is Nonsense in these Read Frames"> ##INFO=<ID=VFX,Number=1,Type=String,Description="Indel Causes Frameshift"> ##INFO=<ID=WP,Number=A,Type=Integer,Description="NEAT-GenReads ploidy indicator"> ##ALT=<ID=DEL,Description="Deletion"> ##ALT=<ID=DUP,Description="Duplication"> ##ALT=<ID=INS,Description="Insertion of novel sequence"> ##ALT=<ID=INV,Description="Inversion"> ##ALT=<ID=CNV,Description="Copy number variable region"> ##ALT=<ID=TRANS,Description="Translocation"> ##ALT=<ID=INV-TRANS,Description="Inverted translocation"> #CHROM POS ID REF ALT QUAL FILTER INFO MT 335 . A AATTA . PASS WP=0/1 MT 4078 . T C . PASS WP=0/1 MT 4682 . A G . PASS WP=0/1 MT 5713 . C T . PASS WP=0/1 MT 6503 . A G . PASS WP=0/1 MT 7425 . C T . PASS WP=1/0 MT 7778 . T C . PASS WP=1/0 MT 8471 . C T . PASS WP=1/0 MT 8776 . C T . PASS WP=0/1 MT 10750 . A G . PASS WP=0/1 MT 11273 . G A . PASS WP=0/1 MT 11743 . C T . PASS WP=1/0 MT 13132 . C CT . PASS WP=0/1 MT 13273 . A G . PASS WP=1/0 MT 13804 . G A . PASS WP=0/1 MT 14067 . C T . PASS WP=0/1