Mercurial > repos > tiagoantao > clone_filter
comparison STACKS_clone_filter.xml @ 9:89b911668f1d draft
planemo upload commit 4d00a0b7a4b859b642eceb3c7cd4adb1453903a0-dirty
| author | tiagoantao |
|---|---|
| date | Thu, 04 Feb 2016 08:14:48 -0500 |
| parents | a8b87bc0c3ad |
| children | 96f850a2b418 |
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| 8:a8b87bc0c3ad | 9:89b911668f1d |
|---|---|
| 39 <when value="pair"> | 39 <when value="pair"> |
| 40 <param name="fwd" type="data" format="fastq" label="Forward FASTQ" /> | 40 <param name="fwd" type="data" format="fastq" label="Forward FASTQ" /> |
| 41 <param name="rev" type="data" format="fastq" label="Reverse FASTQ" /> | 41 <param name="rev" type="data" format="fastq" label="Reverse FASTQ" /> |
| 42 </when> | 42 </when> |
| 43 </conditional> | 43 </conditional> |
| 44 <param name="oligo_len_1" type="integer" label="length of the single-end oligo sequence in data set (-1 == ignore)"/> | 44 <param name="oligo_len_1" value="-1" type="integer" label="length of the single-end oligo sequence in data set (-1 == ignore)"/> |
| 45 <param name="oligo_len_2" type="integer" label="length of the paired-end oligo sequence in data set (-1 == ignore)"/> | 45 <param name="oligo_len_2" value="-1" type="integer" label="length of the paired-end oligo sequence in data set (-1 == ignore)"/> |
| 46 <param name="oligo_options" type="select" label="Oligo sequence options"> | 46 <param name="oligo_options" type="select" label="Oligo sequence options"> |
| 47 <option value="inline_null" selected="true">random oligo is inline with sequence, occurs only on single-end read</option> | 47 <option value="inline_null" selected="true">random oligo is inline with sequence, occurs only on single-end read</option> |
| 48 <option value="null_index">random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).</option> | 48 <option value="null_index">random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).</option> |
| 49 <option value="index_null">random oligo is provded in FASTQ header (Illumina i5 or i7 read)</option> | 49 <option value="index_null">random oligo is provded in FASTQ header (Illumina i5 or i7 read)</option> |
| 50 <option value="inline_inline">random oligo is inline with sequence, occurs on single and paired-end read</option> | 50 <option value="inline_inline">random oligo is inline with sequence, occurs on single and paired-end read</option> |