Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/DNAPropertyCalculator.xml @ 12:81d5b81fb3c2 draft
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
| author | timpalpant |
|---|---|
| date | Wed, 25 Apr 2012 16:53:48 -0400 |
| parents | 9266d807ca85 |
| children | eb53be9a09f4 |
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| 11:b1952a90d4bf | 12:81d5b81fb3c2 |
|---|---|
| 78 </when> | 78 </when> |
| 79 </conditional> | 79 </conditional> |
| 80 </actions> | 80 </actions> |
| 81 </data> | 81 </data> |
| 82 </outputs> | 82 </outputs> |
| 83 | |
| 84 <help> | |
| 85 | |
| 86 This tool will create a new Wig file with genome-wide calculations of sequence-specific DNA properties determined from local n-nucleotide sequences. DNA properties are calculated using AJT_. | |
| 87 | |
| 88 .. _AJT: http://www.abeel.be/ajt | |
| 89 | |
| 90 ----- | |
| 91 | |
| 92 **Example** | |
| 93 | |
| 94 To calculate GC-content, choose your genome assembly and select "GC" as the property. This will create a new Wig file in which G and C nucleotides are represented by 1, while A and T nucleotides are represented by -1. If you would like to compute GC-content in 10-bp windows, use the WigMath -> Moving average tool to compute a moving average with 10bp windows. | |
| 95 | |
| 96 </help> | |
| 83 </tool> | 97 </tool> |