Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/DNAPropertyCalculator.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents 9266d807ca85
children eb53be9a09f4
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--- a/galaxy-conf/DNAPropertyCalculator.xml	Mon Apr 09 11:50:23 2012 -0400
+++ b/galaxy-conf/DNAPropertyCalculator.xml	Wed Apr 25 16:53:48 2012 -0400
@@ -80,4 +80,18 @@
         </actions>
       </data>
   </outputs>
+  
+  <help>
+
+This tool will create a new Wig file with genome-wide calculations of sequence-specific DNA properties determined from local n-nucleotide sequences. DNA properties are calculated using AJT_.
+
+.. _AJT: http://www.abeel.be/ajt
+
+-----
+
+**Example**
+
+To calculate GC-content, choose your genome assembly and select "GC" as the property. This will create a new Wig file in which G and C nucleotides are represented by 1, while A and T nucleotides are represented by -1. If you would like to compute GC-content in 10-bp windows, use the WigMath -> Moving average tool to compute a moving average with 10bp windows.
+
+  </help>
 </tool>