Mercurial > repos > triasteran > ribogalaxy_umi_processing
diff UMI_riboseq_tool/UMI_riboseq.xml @ 12:3bd2e8301575 draft
Uploaded
author | jackcurragh |
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date | Mon, 25 Jul 2022 11:46:24 +0000 |
parents | d003917eaf2c |
children | be4f6b1e3f75 |
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--- a/UMI_riboseq_tool/UMI_riboseq.xml Mon Jul 25 11:34:03 2022 +0000 +++ b/UMI_riboseq_tool/UMI_riboseq.xml Mon Jul 25 11:46:24 2022 +0000 @@ -1,15 +1,15 @@ -<tool id="UMI_riboseq" name="UMIs to Header" version="0.1.7"> +<tool id="UMI_riboseq" name="UMIs to Header" version="0.1.8"> <requirements> <requirement type="package" version="1.75">biopython</requirement> </requirements> <command detect_errors="exit_code"> -<![CDATA[ python3 '$__tool_directory__/UMI.py' $reads $output $gzip $5_prime_UMI_length $3_prime_UMI_length]]> +<![CDATA[ python3 '$__tool_directory__/UMI.py' $reads $output $gzip $five_prime_UMI_length $three_prime_UMI_length]]> </command> <inputs> <param format="fastqsanger,fastqsanger.gz" name="reads" type="data" label="fastqsanger,fastqsanger.gz"/> <param name="gzip" type="boolean" truevalue="true" falsevalue="false" checked="True" label="Gzip the outputted FASTQ" /> - <param name="5_prime_UMI_length" type="integer" value="2" label="Number of UMI bases at the 5' end" help="2 for McGincy Ingolia Protocol" /> - <param name="3_prime_UMI_length" type="integer" value="5" label="Number of UMI bases at the 3' end)" help="5 for McGincy Ingolia Protocol" /> + <param name="five_prime_UMI_length" type="integer" value=2 label="Number of UMI bases at the 5' end" help="2 for McGincy Ingolia Protocol" /> + <param name="three_prime_UMI_length" type="integer" value=5 label="Number of UMI bases at the 3' end)" help="5 for McGincy Ingolia Protocol" /> </inputs> <outputs>