Mercurial > repos > triasteran > ribogalaxy_umi_processing

changeset 12:3bd2e8301575 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jackcurragh
date Mon, 25 Jul 2022 11:46:24 +0000
parents 0b5c3e35cddb
children be4f6b1e3f75
files UMI_riboseq_tool/UMI_riboseq.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/UMI_riboseq_tool/UMI_riboseq.xml	Mon Jul 25 11:34:03 2022 +0000
+++ b/UMI_riboseq_tool/UMI_riboseq.xml	Mon Jul 25 11:46:24 2022 +0000
@@ -1,15 +1,15 @@
-<tool id="UMI_riboseq" name="UMIs to Header" version="0.1.7">
+<tool id="UMI_riboseq" name="UMIs to Header" version="0.1.8">
 <requirements>
     <requirement type="package" version="1.75">biopython</requirement>
 </requirements>
 <command detect_errors="exit_code">
-<![CDATA[ python3 '$__tool_directory__/UMI.py' $reads $output $gzip $5_prime_UMI_length $3_prime_UMI_length]]>
+<![CDATA[ python3 '$__tool_directory__/UMI.py' $reads $output $gzip $five_prime_UMI_length $three_prime_UMI_length]]>
 </command>
 <inputs>
     <param format="fastqsanger,fastqsanger.gz" name="reads" type="data" label="fastqsanger,fastqsanger.gz"/>
     <param name="gzip" type="boolean" truevalue="true" falsevalue="false" checked="True" label="Gzip the outputted FASTQ" />
-    <param name="5_prime_UMI_length" type="integer" value="2" label="Number of UMI bases at the 5' end" help="2 for McGincy Ingolia Protocol" />
-    <param name="3_prime_UMI_length" type="integer" value="5" label="Number of UMI bases at the 3' end)" help="5 for McGincy Ingolia Protocol" />
+    <param name="five_prime_UMI_length" type="integer" value=2 label="Number of UMI bases at the 5' end" help="2 for McGincy Ingolia Protocol" />
+    <param name="three_prime_UMI_length" type="integer" value=5 label="Number of UMI bases at the 3' end)" help="5 for McGincy Ingolia Protocol" />
 
 </inputs>
 <outputs>