Mercurial > repos > triasteran > ribogalaxy_umi_processing

changeset 17:42f195d0ed6d draft

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Uploaded
author triasteran
date Fri, 30 Sep 2022 09:44:28 +0000
parents cf1a0cbe5c34
children 106ef893af60
files UMI_riboseq_tool/UMI_riboseq.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/UMI_riboseq_tool/UMI_riboseq.xml	Fri Sep 30 09:27:53 2022 +0000
+++ b/UMI_riboseq_tool/UMI_riboseq.xml	Fri Sep 30 09:44:28 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="UMI_riboseq" name="UMIs to Header" version="0.1.9">
+<tool id="UMI_riboseq" name="UMIs to Header" version="0.1.10">
 <requirements>
     <requirement type="package" version="1.75">biopython</requirement>
 </requirements>
@@ -6,14 +6,14 @@
 <![CDATA[ python3 $__tool_directory__/UMI.py $reads $output $gzip ${five_prime_UMI_length} ${three_prime_UMI_length}]]>
 </command>
 <inputs>
-    <param format="fastqsanger,fastqsanger.gz" name="reads" type="data" label="fastqsanger,fastqsanger.gz"/>
+    <param format="fastq,fastqsanger,fastqsanger.gz" name="reads" type="data" label="fastqsanger,fastqsanger.gz"/>
     <param name="gzip" type="boolean" truevalue="true" falsevalue="false" checked="True" label="Gzip the outputted FASTQ" />
     <param name="five_prime_UMI_length" type="integer" value='2' label="Number of UMI bases at the 5' end" help="2 for McGlincy Ingolia Protocol" />
     <param name="three_prime_UMI_length" type="integer" value='5' label="Number of UMI bases at the 3' end)" help="5 for McGlincy Ingolia Protocol" />
 
 </inputs>
 <outputs>
-    <data format="fastqsanger,fastqsanger.gz" name="output"/>
+    <data format="fastq,fastqsanger,fastqsanger.gz" name="output"/>
 </outputs>
 <tests>
     <test>