Mercurial > repos > triasteran > ribogalaxy_umi_processing
changeset 15:b90ecf790d5b draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Mon, 25 Jul 2022 12:40:07 +0000 |
| parents | f3265ca6d87c |
| children | cf1a0cbe5c34 |
| files | UMI_riboseq_tool/UMI_riboseq.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/UMI_riboseq_tool/UMI_riboseq.xml Mon Jul 25 12:02:35 2022 +0000 +++ b/UMI_riboseq_tool/UMI_riboseq.xml Mon Jul 25 12:40:07 2022 +0000 @@ -3,13 +3,13 @@ <requirement type="package" version="1.75">biopython</requirement> </requirements> <command detect_errors="exit_code"> -<![CDATA[ python3 '$__tool_directory__/UMI.py' $reads $output $gzip $five_prime_UMI_length $three_prime_UMI_length]]> +<![CDATA[ python3 $__tool_directory__/UMI.py $reads $output $gzip $five_prime_UMI_length $three_prime_UMI_length]]> </command> <inputs> <param format="fastqsanger,fastqsanger.gz" name="reads" type="data" label="fastqsanger,fastqsanger.gz"/> <param name="gzip" type="boolean" truevalue="true" falsevalue="false" checked="True" label="Gzip the outputted FASTQ" /> - <param name="five_prime_UMI_length" type="integer" value=2 label="Number of UMI bases at the 5' end" help="2 for McGlincy Ingolia Protocol" /> - <param name="three_prime_UMI_length" type="integer" value=5 label="Number of UMI bases at the 3' end)" help="5 for McGlincy Ingolia Protocol" /> + <param name="five_prime_UMI_length" type="integer" value='2' label="Number of UMI bases at the 5' end" help="2 for McGlincy Ingolia Protocol" /> + <param name="three_prime_UMI_length" type="integer" value='5' label="Number of UMI bases at the 3' end)" help="5 for McGlincy Ingolia Protocol" /> </inputs> <outputs>