Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
annotate orthologs/ucsb_hamster/lib/wisecfg/human.gf @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
---|---|
date | Tue, 11 Mar 2014 12:19:13 -0700 |
parents | |
children |
rev | line source |
---|---|
0
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
1 # Splice sites and intron regions information for GeneWise-21 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
2 # Wed Jan 1 13:42:23 IST 1997 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
3 # Created by Mor Amitai (mor@compugen.co.il) |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
4 # dataset : hum1 and hum2 from embl48 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
5 # Consensi are read from top down. The value, for a sequence, |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
6 # is the number in the line of the first consensus that |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
7 # matches the sequence. |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
8 # Note: the set of sequences that are represented by a consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
9 # are all the sequences that match this consensus and none of the |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
10 # previous consensi |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
11 # |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
12 # the numbers in types 5SS, 3SS, CDS, and the emissions are the number of |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
13 # occurrences of each sequence in the database. |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
14 # In case of a consensus this is the number of occurrences of sequences |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
15 # that are represented by the consensus in the database divided by the |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
16 # number of sequences that are represented by the consensus. |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
17 # *stay_prob is the probability of the transition from the state to itself. |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
18 # No_Spacer_Prob is the probability of transition from Pyrimidine directly |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
19 # to 3SS (no spacer). |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
20 type 5SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
21 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
22 phase all |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
23 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
24 C-GGTGAGTG 15.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
25 --GGTGAGTG 8.83333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
26 CAGGTGAG-- 7.6 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
27 AAGGTGAG-- 6.86667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
28 CAGGTAAG-- 4.3125 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
29 GAGGTGAG-- 4.26667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
30 AAGGTAAG-- 4.1875 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
31 --GGTGAGT- 1.71795 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
32 ---GTGAGTG 1.66667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
33 --GGTGAG-C 1.51282 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
34 -A-GTAAGT- 1.41071 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
35 -AGGTG-GT- 1.39583 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
36 -TGGTAAG-- 1.39062 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
37 CAGGTA-G-- 1.35417 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
38 AAGGTA-G-- 1.04167 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
39 -GGGTAAG-- 1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
40 --GGTGAG-- 0.91453 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
41 -C-GTAAGT- 0.828125 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
42 ---GTGAGT- 0.729167 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
43 -AGGTAA--- 0.578704 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
44 -AGGTG-G-- 0.506944 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
45 CAGGTA---- 0.381944 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
46 --GGTA-GT- 0.339286 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
47 -AGGTGA--- 0.265625 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
48 --GGTCAG-- 0.207031 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
49 ---GTAAG-- 0.155556 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
50 -AGGTA---- 0.134921 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
51 -AGGT--G-- 0.111607 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
52 --GGT--G-- 0.0369898 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
53 -AGGT----- 0.0250947 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
54 --GGTA---- 0.0234375 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
55 --AGT--G-- 0.0132415 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
56 ---GT----- 0.00148067 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
57 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
58 type 5SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
59 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
60 phase 0 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
61 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
62 A-GGTGAGTG 8.25 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
63 C-GGTGAGTG 7.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
64 AAGGTGAG-- 3.86667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
65 CAGGTGAG-- 3.46667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
66 AAGGTAAG-- 2.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
67 GAGGTGAG-- 2.4375 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
68 --GGTGAGT- 1.19565 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
69 -AGGTAAG-- 1.02083 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
70 -A-GTGAGT- 0.916667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
71 -AGGT--GTG 0.785714 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
72 AAGGT-GG-- 0.716667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
73 -C-GTGAGT- 0.666667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
74 ---GTAAGTG 0.566667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
75 --GGTGAG-- 0.423077 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
76 --GGTAAG-- 0.355556 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
77 CAGGT--G-- 0.3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
78 ---GTAAGT- 0.284722 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
79 -AGGTAA--- 0.265625 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
80 --GGTA-GT- 0.196429 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
81 -AGGTAC--- 0.157895 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
82 AAGGTG---- 0.13964 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
83 -AGGTG---- 0.048048 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
84 -AGGT----- 0.0181818 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
85 --GGT--G-- 0.0129717 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
86 ---GTA---- 0.00291667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
87 ---GT----- 0.000915751 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
88 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
89 type 5SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
90 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
91 phase 1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
92 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
93 --GGTGAGTG 4.375 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
94 CAGGTGAG-- 2.8 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
95 AAGGTGAG-- 2.26667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
96 -AGGTAAG-- 1.01562 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
97 -TGGTAAG-- 0.8125 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
98 -TGGTGAG-- 0.7 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
99 G-GGTGAG-- 0.755556 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
100 CAGGT-GG-- 0.546875 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
101 --GGTGAG-- 0.428571 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
102 ---GTGAGTG 0.625 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
103 ---GTAAGT- 0.223214 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
104 AAGGT--G-- 0.200893 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
105 -AGGTAA--- 0.1875 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
106 --GGTA-G-G 0.175 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
107 CAGGT----- 0.0733945 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
108 ---GTGAG-- 0.0527778 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
109 --GGT--GT- 0.0512129 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
110 A-GGTA---- 0.046398 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
111 -AGGT----- 0.0137104 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
112 ---G-AAG-- 0.00972447 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
113 ---GT----- 0.00111909 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
114 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
115 type 5SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
116 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
117 phase 2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
118 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
119 -AGGTGAG-- 0.703125 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
120 C--GTGAGT- 0.516667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
121 -AGGTAAG-- 0.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
122 ---GTAAGT- 0.241667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
123 --GGTGAG-- 0.227778 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
124 CAGGTA---- 0.133333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
125 ---GTGAG-- 0.0569444 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
126 -AGGT--G-- 0.0483491 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
127 ---GTAAG-- 0.0444444 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
128 --GGTA---- 0.00896991 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
129 ---GT----- 0.000797367 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
130 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
131 type 3SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
132 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
133 phase all |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
134 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
135 CAGGTG 143 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
136 CAGGGT 120 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
137 CAGGGC 88 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
138 CAGGGA 82 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
139 CAGGCT 77 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
140 CAGGAG 73 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
141 CAGGGG 66 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
142 CAGGTA 60 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
143 CAGGCC 58 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
144 CAGGAA 54 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
145 CAGATC 50 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
146 CAGCTG 50 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
147 CAGG-C 43.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
148 CAGG-T 38.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
149 CAGA-C 35.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
150 CAGAT- 29.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
151 CAGA-A 27.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
152 CAG-TC 25.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
153 TAGG-G 21.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
154 CAG-CA 21.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
155 TAGGA- 21.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
156 TAGGG- 20.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
157 CAGA-G 19.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
158 CAGTG- 18.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
159 CAGA-- 18 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
160 TAGG-- 13.8333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
161 CAG-C- 11.8571 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
162 CAG-T- 10.4 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
163 CAG-A- 7.375 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
164 TAGA-- 6.0625 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
165 TAGC-- 3.3125 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
166 AAGG-- 3.125 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
167 -AGT-- 1.08333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
168 -AG--- 0.714286 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
169 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
170 type 3SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
171 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
172 phase 0 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
173 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
174 CAGGGT 88 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
175 CAGGTG 64 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
176 CAGGAG 43 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
177 CAGGG- 40.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
178 CAGATC 32 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
179 CAGG-C 25 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
180 CAGG-A 19 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
181 CAGG-T 17.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
182 CAGA-C 14.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
183 CAG-TG 13 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
184 CAGAA- 13 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
185 CAGA-T 11.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
186 CAGC-C 10.25 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
187 TAGG-- 9.8125 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
188 CAG--A 4.09091 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
189 CAGT-- 4.45455 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
190 TAG-T- 3.33333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
191 TAG--- 1.36111 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
192 -AGG-- 1.06061 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
193 -AG--- 0.342857 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
194 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
195 type 3SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
196 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
197 phase 1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
198 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
199 CAGGTG 71 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
200 CAGGCT 36 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
201 CAGGG- 24.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
202 CAG-CC 17.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
203 CAG-TG 16.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
204 CAGAG- 15.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
205 CAGG-- 14.5556 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
206 CAGA-A 13.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
207 CAGTG- 10.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
208 CAG-TC 10.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
209 TAGG-G 9.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
210 CAGA-- 6.16667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
211 TAGG-- 5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
212 CAGC-- 3.69231 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
213 TAG--- 1.66667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
214 -AG--- 0.328467 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
215 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
216 type 3SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
217 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
218 phase 2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
219 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
220 CAGG-A 19.25 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
221 CAGG-T 14.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
222 CAG-G- 4.57143 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
223 CAG--T 4.66667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
224 TAGG-- 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
225 CAG--- 2.87879 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
226 TAG--- 0.645833 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
227 AAG--- 0.25 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
228 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
229 type CDS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
230 phase all |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
231 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
232 AAA 5290.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
233 AAC 4795.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
234 AAG 8178.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
235 AAT 3305.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
236 ACA 6240.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
237 ACC 7728.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
238 ACG 3347.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
239 ACT 4930.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
240 AGA 8491.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
241 AGC 8639.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
242 AGG 8997.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
243 AGT 4417.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
244 ATA 1975.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
245 ATC 4973.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
246 ATG 6474.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
247 ATT 3083.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
248 CAA 7057.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
249 CAC 6815.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
250 CAG 11041.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
251 CAT 5779.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
252 CCA 10537.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
253 CCC 10307.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
254 CCG 5621.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
255 CCT 10134.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
256 CGA 3377.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
257 CGC 5146.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
258 CGG 5375.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
259 CGT 2765.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
260 CTA 3502.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
261 CTC 7465.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
262 CTG 13780.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
263 CTT 5453.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
264 GAA 7461.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
265 GAC 6937.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
266 GAG 9975.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
267 GAT 4949.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
268 GCA 7747.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
269 GCC 10890.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
270 GCG 4828.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
271 GCT 9371.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
272 GGA 10143.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
273 GGC 10400.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
274 GGG 8869.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
275 GGT 5567.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
276 GTA 2143.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
277 GTC 4593.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
278 GTG 8189.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
279 GTT 3021.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
280 TAA 1775.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
281 TAC 3687.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
282 TAG 1333.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
283 TAT 2477.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
284 TCA 6180.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
285 TCC 7668.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
286 TCG 2875.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
287 TCT 5767.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
288 TGA 7315.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
289 TGC 8625.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
290 TGG 11718.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
291 TGT 5197.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
292 TTA 1664.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
293 TTC 5462.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
294 TTG 4420.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
295 TTT 3453.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
296 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
297 type CDS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
298 phase 0 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
299 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
300 AAA 2167.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
301 AAC 2839.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
302 AAG 4830.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
303 AAT 1616.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
304 ACA 1543.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
305 ACC 3187.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
306 ACG 983.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
307 ACT 1484.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
308 AGA 995.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
309 AGC 2722.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
310 AGG 1326.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
311 AGT 1093.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
312 ATA 585.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
313 ATC 3281.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
314 ATG 2538.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
315 ATT 1584.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
316 CAA 1141.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
317 CAC 1981.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
318 CAG 4796.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
319 CAT 1016.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
320 CCA 2021.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
321 CCC 3183.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
322 CCG 1104.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
323 CCT 2289.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
324 CGA 770.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
325 CGC 2011.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
326 CGG 1762.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
327 CGT 687.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
328 CTA 745.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
329 CTC 2964.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
330 CTG 6980.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
331 CTT 1200.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
332 GAA 2729.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
333 GAC 3946.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
334 GAG 6121.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
335 GAT 2318.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
336 GCA 1767.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
337 GCC 4902.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
338 GCG 1288.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
339 GCT 2556.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
340 GGA 2322.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
341 GGC 4338.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
342 GGG 2688.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
343 GGT 1903.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
344 GTA 690.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
345 GTC 2172.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
346 GTG 4546.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
347 GTT 1020.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
348 TAA 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
349 TAC 2405.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
350 TAG 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
351 TAT 1323.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
352 TCA 990.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
353 TCC 2579.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
354 TCG 684.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
355 TCT 1522.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
356 TGA 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
357 TGC 1747.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
358 TGG 1766.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
359 TGT 931.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
360 TTA 397.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
361 TTC 3156.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
362 TTG 1313.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
363 TTT 1697.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
364 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
365 type CDS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
366 phase 1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
367 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
368 AAA 1534.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
369 AAC 1140.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
370 AAG 2597.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
371 AAT 767.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
372 ACA 3632.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
373 ACC 3429.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
374 ACG 1849.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
375 ACT 2262.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
376 AGA 4427.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
377 AGC 4014.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
378 AGG 5377.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
379 AGT 1927.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
380 ATA 953.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
381 ATC 1055.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
382 ATG 3488.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
383 ATT 777.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
384 CAA 998.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
385 CAC 1332.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
386 CAG 3260.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
387 CAT 731.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
388 CCA 4701.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
389 CCC 3908.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
390 CCG 2252.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
391 CCT 2992.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
392 CGA 471.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
393 CGC 1361.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
394 CGG 1785.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
395 CGT 443.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
396 CTA 825.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
397 CTC 1766.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
398 CTG 4378.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
399 CTT 882.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
400 GAA 924.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
401 GAC 843.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
402 GAG 1897.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
403 GAT 424.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
404 GCA 3140.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
405 GCC 3275.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
406 GCG 1806.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
407 GCT 2595.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
408 GGA 1911.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
409 GGC 2034.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
410 GGG 2835.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
411 GGT 762.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
412 GTA 577.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
413 GTC 968.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
414 GTG 2506.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
415 GTT 563.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
416 TAA 622.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
417 TAC 561.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
418 TAG 912.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
419 TAT 322.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
420 TCA 3963.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
421 TCC 3535.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
422 TCG 1466.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
423 TCT 2607.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
424 TGA 3311.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
425 TGC 4099.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
426 TGG 6194.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
427 TGT 1772.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
428 TTA 773.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
429 TTC 1353.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
430 TTG 2662.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
431 TTT 713.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
432 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
433 type CDS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
434 phase 2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
435 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
436 AAA 1589.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
437 AAC 816.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
438 AAG 751.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
439 AAT 922.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
440 ACA 1065.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
441 ACC 1112.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
442 ACG 515.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
443 ACT 1184.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
444 AGA 3069.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
445 AGC 1903.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
446 AGG 2294.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
447 AGT 1397.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
448 ATA 437.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
449 ATC 637.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
450 ATG 448.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
451 ATT 722.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
452 CAA 4918.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
453 CAC 3502.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
454 CAG 2985.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
455 CAT 4032.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
456 CCA 3815.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
457 CCC 3216.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
458 CCG 2265.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
459 CCT 4853.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
460 CGA 2136.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
461 CGC 1774.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
462 CGG 1828.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
463 CGT 1635.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
464 CTA 1932.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
465 CTC 2735.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
466 CTG 2422.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
467 CTT 3371.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
468 GAA 3808.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
469 GAC 2148.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
470 GAG 1957.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
471 GAT 2207.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
472 GCA 2840.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
473 GCC 2713.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
474 GCG 1734.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
475 GCT 4220.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
476 GGA 5910.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
477 GGC 4028.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
478 GGG 3346.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
479 GGT 2902.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
480 GTA 876.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
481 GTC 1453.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
482 GTG 1137.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
483 GTT 1438.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
484 TAA 1153.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
485 TAC 721.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
486 TAG 421.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
487 TAT 832.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
488 TCA 1227.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
489 TCC 1554.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
490 TCG 725.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
491 TCT 1638.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
492 TGA 4004.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
493 TGC 2779.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
494 TGG 3758.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
495 TGT 2494.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
496 TTA 494.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
497 TTC 953.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
498 TTG 445.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
499 TTT 1043.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
500 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
501 type Intron_Corr_Term |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
502 phase all |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
503 65.6094 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
504 type Intron_Corr_Term |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
505 phase 0 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
506 141.429 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
507 type Intron_Corr_Term |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
508 phase 1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
509 172.738 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
510 type Intron_Corr_Term |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
511 phase 2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
512 371.127 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
513 type Intron_emission |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
514 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
515 A 399845.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
516 C 371259.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
517 G 393779.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
518 T 425926.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
519 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
520 type Pyrimidine_emission |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
521 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
522 A 2299.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
523 C 18610.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
524 G 2345.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
525 T 17132.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
526 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
527 type Spacer_emission |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
528 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
529 A 3020.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
530 C 3834.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
531 G 3644.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
532 T 4224.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
533 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
534 type Central_Intron_Stay_Prob |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
535 0.99853 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
536 type Pyrimidine_Stay_Prob |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
537 0.944485 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
538 type No_Spacer_Prob |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
539 0.331508 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
540 type Spacer_Stay_Prob |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
541 0.902704 |