annotate orthologs/ucsb_hamster/lib/wisecfg/pb.gf @ 0:5b9a38ec4a39 draft default tip

First commit of old repositories
author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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1 # Splice sites and intron regions information for GeneWise-21 May 1500
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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2 # Created by Mor Amitai (mor@compugen.co.il)
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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3 # dataset : ~/ftp/pub/PomBase/temp/cds_cdna ~/ftp/pub/PomBase/temp/cds_ex
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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4 # Consensi are read from top down. The value, for a sequence,
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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5 # is the number in the line of the first consensus that
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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6 # matches the sequence.
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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7 # Note: the set of sequences that are represented by a consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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8 # are all the sequences that match this consensus and none of the
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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9 # previous consensi
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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10 #
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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11 # the numbers in types 5SS, 3SS, CDS, and the emissions are the number of
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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12 # occurrences of each sequence in the database.
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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13 # In case of a consensus this is the number of occurrences of sequences
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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14 # that are represented by the consensus in the database divided by the
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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15 # number of sequences that are represented by the consensus.
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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16 # *stay_prob is the probability of the transition from the state to itself.
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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17 # No_Spacer_Prob is the probability of transition from Pyrimidine directly
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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18 # to 3SS (no spacer).
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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19 type 5SS
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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20 center 3
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21 phase all
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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22 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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23 ---GTA-GT- 8.69141
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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24 ---GT----- 0.0821553
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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25 end consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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26 type 5SS
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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27 center 3
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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28 phase 0
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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29 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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30 ---GTA-GT- 3.71094
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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31 ---GT----- 0.0356523
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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32 end consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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33 type 5SS
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34 center 3
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35 phase 1
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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36 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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37 ---GTA-GT- 2.92969
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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38 ---GT----- 0.0294519
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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39 end consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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40 type 5SS
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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41 center 3
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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42 phase 2
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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43 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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44 ---GT----- 0.0488281
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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45 end consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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46 type 3SS
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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47 center 3
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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48 phase all
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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49 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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50 TAG--- 1.64062
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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51 -AG--- 22.9167
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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52 end consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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53 type 3SS
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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54 center 3
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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55 phase 0
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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56 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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57 TAG--- 0.765625
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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58 -AG--- 9.375
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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59 end consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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60 type 3SS
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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61 center 3
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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62 phase 1
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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63 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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64 TAG--- 0.515625
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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65 -AG--- 8.85417
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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66 end consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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67 type 3SS
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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68 center 3
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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69 phase 2
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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70 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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71 -AG--- 12.5
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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72 end consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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73 type CDS
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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74 phase all
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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75 begin consensus
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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76 AAA 238.6335
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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77 AAC 105.316
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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78 AAG 156.4912
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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79 AAT 168.6987
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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80 ACA 98.7639
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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81 ACC 64.5552
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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82 ACG 58.8997
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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83 ACT 105.1091
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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84 AGA 126.4206
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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85 AGC 83.1769
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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86 AGG 72.7625
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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87 AGT 86.5564
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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88 ATA 99.3847
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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89 ATC 104.0746
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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90 ATG 139.4558
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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91 ATT 185.1134
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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92 CAA 149.8701
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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93 CAC 57.5203
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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94 CAG 70.8314
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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95 CAT 95.1086
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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96 CCA 79.5215
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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97 CCC 49.1751
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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98 CCG 45.5887
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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99 CCT 83.2459
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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100 CGA 70.6935
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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101 CGC 36.8985
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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102 CGG 35.4502
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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103 CGT 74.1419
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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104 CTA 83.6597
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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105 CTC 86.1426
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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106 CTG 91.798
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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107 CTT 143.6629
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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108 GAA 168.216
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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109 GAC 64.1414
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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110 GAG 82.3493
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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111 GAT 125.593
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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112 GCA 79.3146
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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113 GCC 51.589
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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114 GCG 36.4847
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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115 GCT 96.488
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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116 GGA 94.6258
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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117 GGC 47.037
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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118 GGG 35.2433
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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119 GGT 84.6942
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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120 GTA 73.7281
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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121 GTC 68.8313
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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122 GTG 72.4867
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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123 GTT 127.5931
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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124 TAA 113.0406
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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125 TAC 99.9364
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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126 TAG 59.1066
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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127 TAT 138.5592
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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128 TCA 115.9373
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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129 TCC 92.1429
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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130 TCG 76.4179
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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131 TCT 120.5582
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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132 TGA 148.7666
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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133 TGC 96.7638
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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134 TGG 118.0064
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
135 TGT 96.6949
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
136 TTA 153.8704
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
137 TTC 145.5251
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
138 TTG 156.6981
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
139 TTT 212.8391
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
140 end consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
141 type CDS
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
142 phase 0
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
143 begin consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
144 AAA 248.8005
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
145 AAC 103.9424
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
146 AAG 172.7552
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
147 AAT 217.5971
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
148 ACA 87.4108
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
149 ACC 69.0194
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
150 ACG 38.6426
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
151 ACT 163.0428
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
152 AGA 70.2593
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
153 AGC 51.4546
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
154 AGG 27.6904
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
155 AGT 88.0307
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
156 ATA 74.1855
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
157 ATC 72.1191
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
158 ATG 126.4667
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
159 ATT 251.6935
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
160 CAA 170.2754
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
161 CAC 39.4692
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
162 CAG 70.2593
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
163 CAT 104.5623
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
164 CCA 77.4918
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
165 CCC 56.6207
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
166 CCG 25.8306
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
167 CCT 144.4448
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
168 CGA 48.1483
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
169 CGC 42.1556
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
170 CGG 17.1515
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
171 CGT 131.8395
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
172 CTA 50.628
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
173 CTC 47.735
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
174 CTG 34.3031
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
175 CTT 165.7292
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
176 GAA 288.4763
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
177 GAC 103.9424
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
178 GAG 150.4375
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
179 GAT 257.6862
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
180 GCA 100.4294
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
181 GCC 74.5988
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
182 GCG 29.1369
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
183 GCT 190.5266
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
184 GGA 104.9756
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
185 GGC 59.927
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
186 GGG 26.4506
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
187 GGT 158.29
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
188 GTA 76.252
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
189 GTC 75.0121
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
190 GTG 49.5948
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
191 GTT 200.6522
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
192 TAA 0
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
193 TAC 77.0786
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
194 TAG 0
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
195 TAT 147.7511
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
196 TCA 102.4959
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
197 TCC 77.2852
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
198 TCG 41.5356
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
199 TCT 182.6741
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
200 TGA 0
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
201 TGC 32.2366
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
202 TGG 58.8938
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
203 TGT 48.5616
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
204 TTA 163.0428
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
205 TTC 90.7171
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
206 TTG 145.0647
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
207 TTT 196.5193
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
208 end consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
209 type CDS
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
210 phase 1
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
211 begin consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
212 AAA 234.9249
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
213 AAC 117.7724
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
214 AAG 221.908
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
215 AAT 133.0621
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
216 ACA 116.7393
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
217 ACC 50.4148
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
218 ACG 81.6142
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
219 ACT 75.6223
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
220 AGA 108.6812
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
221 AGC 97.937
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
222 AGG 113.4334
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
223 AGT 73.5561
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
224 ATA 169.427
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
225 ATC 136.5747
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
226 ATG 253.9338
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
227 ATT 167.5674
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
228 CAA 120.0452
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
229 CAC 66.7377
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
230 CAG 102.8959
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
231 CAT 78.1017
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
232 CCA 99.7966
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
233 CCC 45.6626
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
234 CCG 72.7296
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
235 CCT 59.5061
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
236 CGA 43.5964
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
237 CGC 22.728
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
238 CGG 37.8111
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
239 CGT 30.9927
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
240 CTA 166.1211
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
241 CTC 141.3269
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
242 CTG 215.7094
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
243 CTT 157.6497
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
244 GAA 86.573
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
245 GAC 38.431
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
246 GAG 54.5472
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
247 GAT 44.0097
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
248 GCA 61.5722
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
249 GCC 35.5383
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
250 GCG 47.5222
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
251 GCT 41.117
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
252 GGA 40.7038
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
253 GGC 24.5876
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
254 GGG 33.4722
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
255 GGT 31.406
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
256 GTA 107.6481
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
257 GTC 79.1348
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
258 GTG 150.4181
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
259 GTT 89.4657
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
260 TAA 114.0533
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
261 TAC 76.862
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
262 TAG 96.4907
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
263 TAT 76.6554
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
264 TCA 89.6723
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
265 TCC 59.5061
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
266 TCG 76.0355
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
267 TCT 60.3325
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
268 TGA 103.7224
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
269 TGC 66.5311
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
270 TGG 120.8717
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
271 TGT 64.0517
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
272 TTA 199.3866
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
273 TTC 168.6005
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
274 TTG 265.2978
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
275 TTT 181.2042
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
276 end consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
277 type CDS
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
278 phase 2
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
279 begin consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
280 AAA 231.6265
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
281 AAC 94.221
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
282 AAG 74.5916
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
283 AAT 155.1753
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
284 ACA 92.1547
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
285 ACC 74.385
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
286 ACG 56.6152
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
287 ACT 76.6578
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
288 AGA 200.2195
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
289 AGC 100.2131
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
290 AGG 77.2777
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
291 AGT 98.1468
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
292 ATA 54.549
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
293 ATC 103.5191
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
294 ATG 37.8124
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
295 ATT 135.7526
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
296 CAA 159.1012
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
297 CAC 66.5332
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
298 CAG 39.4654
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
299 CAT 102.6926
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
300 CCA 61.3676
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
301 CCC 45.4575
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
302 CCG 38.4322
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
303 CCT 45.8707
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
304 CGA 120.4623
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
305 CGC 46.0774
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
306 CGG 51.6562
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
307 CGT 59.7146
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
308 CTA 34.2997
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
309 CTC 69.426
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
310 CTG 25.4149
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
311 CTT 107.445
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
312 GAA 129.3472
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
313 GAC 50.2099
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
314 GAG 42.1515
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
315 GAT 75.0048
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
316 GCA 76.038
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
317 GCC 44.8376
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
318 GCG 33.06
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
319 GCT 57.855
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
320 GGA 138.2321
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
321 GGC 56.8219
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
322 GGG 46.0774
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
323 GGT 64.467
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
324 GTA 37.3991
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
325 GTC 52.4827
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
326 GTG 17.5631
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
327 GTT 92.568
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
328 TAA 224.8079
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
329 TAC 145.8772
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
330 TAG 80.7903
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
331 TAT 191.128
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
332 TCA 155.5886
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
333 TCC 139.6784
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
334 TCG 111.7841
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
335 TCT 118.6027
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
336 TGA 342.1709
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
337 TGC 191.5413
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
338 TGG 174.1848
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
339 TGT 177.4908
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
340 TTA 98.9733
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
341 TTC 177.0775
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
342 TTG 59.508
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
343 TTT 260.3474
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
344 end consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
345 type Intron_Corr_Term
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
346 phase all
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
347 225.12
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
348 type Intron_Corr_Term
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
349 phase 0
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
350 524.049
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
351 type Intron_Corr_Term
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
352 phase 1
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
353 652.388
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
354 type Intron_Corr_Term
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
355 phase 2
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
356 998.969
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
357 type Intron_emission
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
358 begin consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
359 A 123.3115
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
360 C 59.5593
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
361 G 67.0399
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
362 T 150.0893
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
363 end consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
364 type Pyrimidine_emission
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
365 begin consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
366 A 26.1549
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
367 C 86.9936
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
368 G 12.7932
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
369 T 274.0583
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
370 end consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
371 type Spacer_emission
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
372 begin consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
373 A 149.5231
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
374 C 60.7484
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
375 G 51.3573
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
376 T 138.3712
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
377 end consensus
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
378 type Intron_Stay_Prob
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
379 0.988929
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
380 type Central_Intron_Stay_Prob
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
381 0.983466
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
382 type Pyrimidine_Stay_Prob
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
383 0.904578
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
384 type No_Spacer_Prob
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
385 0.0743243
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
386 type Spacer_Stay_Prob
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
387 0.952081