Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
diff orthologs/ucsb_hamster/lib/wisecfg/gene.stat @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
---|---|
date | Tue, 11 Mar 2014 12:19:13 -0700 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/orthologs/ucsb_hamster/lib/wisecfg/gene.stat Tue Mar 11 12:19:13 2014 -0700 @@ -0,0 +1,170 @@ +# +# new genestats file +# +splice3 10 +ENSE00000673410 TCCCACATAGATCA +ENSE00000673409 TATCCTGCAGTATG +ENSE00000673408 TTTGCTATAGATTA +ENSE00000673407 GGTTTTTCAGTTGC +ENSE00000401072 CTCCCATTAGGGTT +ENSE00000868868 TTATTTCTAGCTGA +ENSE00000401061 CTTTGGTTAGGCAG +ENSE00000673400 GTTCTCCCAGGCCT +ENSE00000673402 TGTTTTATAGGGAT +ENSE00000673403 CTTCTTTCAGAATG +ENSE00000868865 ATTATCTTAGTTTC +ENSE00000662824 ATTTTTTTAGTGGA +ENSE00000662823 TCATTTTTAGGAAC +ENSE00000662822 CAAATTTCAGCCAA +ENSE00000662821 TATTCTACAGGAAG +ENSE00000662820 TATTTGGCAGCCGT +ENSE00000662819 TTTCTTACAGATTA +ENSE00000814444 ATTTTTAAAGCATT +ENSE00000814445 TTTTTTCCAGGGAC +ENSE00000814446 CTCTGTCTAGTTTC +ENSE00000814447 CTGCTTTTAGTCTC +ENSE00000814448 TGGATTTCAGTTTC +ENSE00000789672 TGGCATTTAGAAAT +ENSE00000789671 TTGTCCTCAGATTT +ENSE00000814451 TTTCGGGTAGATCA +ENSE00000814452 TTGCTCCTAGGTTT +ENSE00000789668 TTCCCTACAGGCGA +ENSE00000789652 TTCTTTGCAGTTAT +ENSE00000789653 ATTCATTTAGGCAG +ENSE00000789654 TTTGGATCAGGATA +ENSE00000789655 TTTATTTTAGGAAT +ENSE00000789656 CCCTTCCCAGCAAG +ENSE00000789657 TACATGTAAGACCT +ENSE00000789658 TTCCCTGCAGGATA +ENSE00000789659 TTTTGATTAGGATG +ENSE00000789660 TATATTGCAGATAT +ENSE00000789661 CTTTTTCCAGATAA +ENSE00000789662 TTTATTTCAGCTGG +ENSE00000450960 TGTCCTTCAGAACA +ENSE00000789663 TGTTTCTTAGGTAG +ENSE00000789664 ACCTCTGTAGGCAG +ENSE00000789665 GTTCTTTTAGGACA +ENSE00000789666 TTTTTAATAGGGAA +ENSE00000450963 TCCCTGGCAGACTG +ENSE00000813771 AACTTTTCAGCTCT +ENSE00000813770 TATTACACAGGATT +// +splice5 5 +ENSE00000673410 ACTGGTGAGTCCTT +ENSE00000673409 TGAGGTAAGCCTGA +ENSE00000673408 TACGGTAAGTGGTA +ENSE00000673407 TGAAGTAAGGTGCC +ENSE00000401072 CCAAGTAAGTTTTT +ENSE00000868868 TAAGGTGCGTTCAT +ENSE00000401061 AAAAGTAAGTAAAT +ENSE00000673400 AAACGTAAGTTGGA +ENSE00000673402 TGAGGTATGTAAGA +ENSE00000673403 TCAGGTATGACATT +ENSE00000868865 CTATGTGAGTTATG +ENSE00000662824 GTAAGTTATAAGAA +ENSE00000662823 CCATGTAAGTGGTA +ENSE00000662822 TTAGGTAGGTACTA +ENSE00000662821 TCAGGTAGGTACAT +ENSE00000662820 TCAGGTACAGTGAA +ENSE00000662819 CGAGGTATGCAACT +ENSE00000814444 CAGAGTAAGTAACC +ENSE00000814445 AGAGGTAAGCCAGG +ENSE00000814446 GATGGTAAGATGAT +ENSE00000814447 CAGGGTGAGTTGGA +ENSE00000814448 TCAGGTGAGGGCAT +ENSE00000789672 TTAAGTAAGTTCAG +ENSE00000789671 AAAGGTGAATGCTT +ENSE00000814451 ACAGGTCAGAGGCC +ENSE00000814452 GAAGGTAAGAATTA +ENSE00000789668 TGAGGTGAGTACTT +ENSE00000789652 TTAAGTAAGTTTGT +ENSE00000789653 ACAGGTAAAATTTG +ENSE00000789654 TAAGGTAAGGCTTT +ENSE00000789655 ACAGGTAAGAAGAA +ENSE00000789656 TTAGGTAAGCTTCA +// +# A G C T N +intron_emission +0.25 0.25 0.25 0.25 0.25 +// +polyp_emission +0.2 0.2 0.3 0.3 0.25 +// +rnd_emission +0.25 0.25 0.25 0.25 0.25 +// +rndcodon +AAA 5290.000000 +AAC 4795.000000 +AAG 8178.000000 +AAT 3305.000000 +ACA 6240.000000 +ACC 7728.000000 +ACG 3347.000000 +ACT 4930.000000 +AGA 8491.000000 +AGC 8639.000000 +AGG 8997.000000 +AGT 4417.000000 +ATA 1975.000000 +ATC 4973.000000 +ATG 6474.000000 +ATT 3083.000000 +CAA 7057.000000 +CAC 6815.000000 +CAG 11041.000000 +CAT 5779.000000 +CCA 10537.000000 +CCC 10307.000000 +CCG 5621.000000 +CCT 10134.000000 +CGA 3377.000000 +CGC 5146.000000 +CGG 5375.000000 +CGT 2765.000000 +CTA 3502.000000 +CTC 7465.000000 +CTG 13780.000000 +CTT 5453.000000 +GAA 7461.000000 +GAC 6937.000000 +GAG 9975.000000 +GAT 4949.000000 +GCA 7747.000000 +GCC 10890.000000 +GCG 4828.000000 +GCT 9371.000000 +GGA 10143.000000 +GGC 10400.000000 +GGG 8869.000000 +GGT 5567.000000 +GTA 2143.000000 +GTC 4593.000000 +GTG 8189.000000 +GTT 3021.000000 +TAA 1775.000000 +TAC 3687.000000 +TAG 1333.000000 +TAT 2477.000000 +TCA 6180.000000 +TCC 7668.000000 +TCG 2875.000000 +TCT 5767.000000 +TGA 7315.000000 +TGC 8625.000000 +TGG 11718.000000 +TGT 5197.000000 +TTA 1664.000000 +TTC 5462.000000 +TTG 4420.000000 +TTT 3453.000000 +// + + + + + + + + +