view orthologs/ucsb_hamster/lib/wisecfg/gene.stat @ 0:5b9a38ec4a39 draft default tip

First commit of old repositories

#
# new genestats file
#
splice3 10
ENSE00000673410   TCCCACATAGATCA
ENSE00000673409   TATCCTGCAGTATG
ENSE00000673408   TTTGCTATAGATTA
ENSE00000673407   GGTTTTTCAGTTGC
ENSE00000401072   CTCCCATTAGGGTT
ENSE00000868868   TTATTTCTAGCTGA
ENSE00000401061   CTTTGGTTAGGCAG
ENSE00000673400   GTTCTCCCAGGCCT
ENSE00000673402   TGTTTTATAGGGAT
ENSE00000673403   CTTCTTTCAGAATG
ENSE00000868865   ATTATCTTAGTTTC
ENSE00000662824   ATTTTTTTAGTGGA
ENSE00000662823   TCATTTTTAGGAAC
ENSE00000662822   CAAATTTCAGCCAA
ENSE00000662821   TATTCTACAGGAAG
ENSE00000662820   TATTTGGCAGCCGT
ENSE00000662819   TTTCTTACAGATTA
ENSE00000814444   ATTTTTAAAGCATT
ENSE00000814445   TTTTTTCCAGGGAC
ENSE00000814446   CTCTGTCTAGTTTC
ENSE00000814447   CTGCTTTTAGTCTC
ENSE00000814448   TGGATTTCAGTTTC
ENSE00000789672   TGGCATTTAGAAAT
ENSE00000789671   TTGTCCTCAGATTT
ENSE00000814451   TTTCGGGTAGATCA
ENSE00000814452   TTGCTCCTAGGTTT
ENSE00000789668   TTCCCTACAGGCGA
ENSE00000789652   TTCTTTGCAGTTAT
ENSE00000789653   ATTCATTTAGGCAG
ENSE00000789654   TTTGGATCAGGATA
ENSE00000789655   TTTATTTTAGGAAT
ENSE00000789656   CCCTTCCCAGCAAG
ENSE00000789657   TACATGTAAGACCT
ENSE00000789658   TTCCCTGCAGGATA
ENSE00000789659   TTTTGATTAGGATG
ENSE00000789660   TATATTGCAGATAT
ENSE00000789661   CTTTTTCCAGATAA
ENSE00000789662   TTTATTTCAGCTGG
ENSE00000450960   TGTCCTTCAGAACA
ENSE00000789663   TGTTTCTTAGGTAG
ENSE00000789664   ACCTCTGTAGGCAG
ENSE00000789665   GTTCTTTTAGGACA
ENSE00000789666   TTTTTAATAGGGAA
ENSE00000450963   TCCCTGGCAGACTG
ENSE00000813771   AACTTTTCAGCTCT
ENSE00000813770   TATTACACAGGATT
//
splice5 5
ENSE00000673410   ACTGGTGAGTCCTT
ENSE00000673409   TGAGGTAAGCCTGA
ENSE00000673408   TACGGTAAGTGGTA
ENSE00000673407   TGAAGTAAGGTGCC
ENSE00000401072   CCAAGTAAGTTTTT
ENSE00000868868   TAAGGTGCGTTCAT
ENSE00000401061   AAAAGTAAGTAAAT
ENSE00000673400   AAACGTAAGTTGGA
ENSE00000673402   TGAGGTATGTAAGA
ENSE00000673403   TCAGGTATGACATT
ENSE00000868865   CTATGTGAGTTATG
ENSE00000662824   GTAAGTTATAAGAA
ENSE00000662823   CCATGTAAGTGGTA
ENSE00000662822   TTAGGTAGGTACTA
ENSE00000662821   TCAGGTAGGTACAT
ENSE00000662820   TCAGGTACAGTGAA
ENSE00000662819   CGAGGTATGCAACT
ENSE00000814444   CAGAGTAAGTAACC
ENSE00000814445   AGAGGTAAGCCAGG
ENSE00000814446   GATGGTAAGATGAT
ENSE00000814447   CAGGGTGAGTTGGA
ENSE00000814448   TCAGGTGAGGGCAT
ENSE00000789672   TTAAGTAAGTTCAG
ENSE00000789671   AAAGGTGAATGCTT
ENSE00000814451   ACAGGTCAGAGGCC
ENSE00000814452   GAAGGTAAGAATTA
ENSE00000789668   TGAGGTGAGTACTT
ENSE00000789652   TTAAGTAAGTTTGT
ENSE00000789653   ACAGGTAAAATTTG
ENSE00000789654   TAAGGTAAGGCTTT
ENSE00000789655   ACAGGTAAGAAGAA
ENSE00000789656   TTAGGTAAGCTTCA
//
# A G C T N
intron_emission 
0.25 0.25 0.25 0.25 0.25
//
polyp_emission  
0.2  0.2  0.3  0.3  0.25
//
rnd_emission 
0.25 0.25 0.25 0.25 0.25
//
rndcodon 
AAA 5290.000000
AAC 4795.000000
AAG 8178.000000
AAT 3305.000000
ACA 6240.000000
ACC 7728.000000
ACG 3347.000000
ACT 4930.000000
AGA 8491.000000
AGC 8639.000000
AGG 8997.000000
AGT 4417.000000
ATA 1975.000000
ATC 4973.000000
ATG 6474.000000
ATT 3083.000000
CAA 7057.000000
CAC 6815.000000
CAG 11041.000000
CAT 5779.000000
CCA 10537.000000
CCC 10307.000000
CCG 5621.000000
CCT 10134.000000
CGA 3377.000000
CGC 5146.000000
CGG 5375.000000
CGT 2765.000000
CTA 3502.000000
CTC 7465.000000
CTG 13780.000000
CTT 5453.000000
GAA 7461.000000
GAC 6937.000000
GAG 9975.000000
GAT 4949.000000
GCA 7747.000000
GCC 10890.000000
GCG 4828.000000
GCT 9371.000000
GGA 10143.000000
GGC 10400.000000
GGG 8869.000000
GGT 5567.000000
GTA 2143.000000
GTC 4593.000000
GTG 8189.000000
GTT 3021.000000
TAA 1775.000000
TAC 3687.000000
TAG 1333.000000
TAT 2477.000000
TCA 6180.000000
TCC 7668.000000
TCG 2875.000000
TCT 5767.000000
TGA 7315.000000
TGC 8625.000000
TGG 11718.000000
TGT 5197.000000
TTA 1664.000000
TTC 5462.000000
TTG 4420.000000
TTT 3453.000000
//