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diff phyloconversion/raxify_fasta.xml @ 0:5b9a38ec4a39 draft default tip

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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/phyloconversion/raxify_fasta.xml	Tue Mar 11 12:19:13 2014 -0700
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+<tool id="raxify_fasta" name="Raxify_FASTA" version="1.0">
+    <description>Alters FASTA headers for more consistent use in FASTA2PHYLIPe for 
+RAxML</description>
+    <command interpreter="perl">
+		raxify_fasta.pl $infile $outfile
+    </command>
+    <inputs>
+	    <param name="infile" type="data" format="fasta" label="Input File" help="FASTA file to 
+convert" />
+    </inputs>
+    <outputs>
+	<data format="fasta" name="outfile" label="${tool.name} on ${on_string}: Out file" />
+    </outputs>
+    <help>
+**What it does**
+
+Truncates FASTA header to 50 characters then replaces spaces, pipes and periods with 
+underscores.
+
+------
+
+**Inputs**
+
+FASTA
+
+------
+
+**Outputs**
+
+PHYLIP extended
+
+------
+
+**Additional Information**
+
+Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the 
+osiris_phylogenetics site at bitbucket.org
+
+------
+
+**Citations**
+
+This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use 
+of this tool in a publication, please consider citing the following.
+
+Current Osiris Citation is here
+
+http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
+    </help>
+</tool>