Mercurial > repos > ufz > omero_import

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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 636cbb62d59819caca5bc9eab0a8ec31be5bdd46
author ufz
date Mon, 16 Dec 2024 20:56:02 +0000
parents b3d29ef12aed
children
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b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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1 # OMERO import images
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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3 ## Set up user credentials on Galaxy to connect to other omero instance
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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5 To enable users to set their credentials for this tool,
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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6 make sure the file `config/user_preferences_extra.yml` has the following section:
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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8 ```
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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9 omero_account:
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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10 description: Your OMERO instance connection credentials
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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11 inputs:
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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12 - name: username
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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13 label: Username
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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14 type: text
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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15 required: False
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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16 - name: password
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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17 label: Password
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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18 type: password
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
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19 required: False