Mercurial > repos > ufz > omero_import
annotate README.md @ 0:b3d29ef12aed draft
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
author | ufz |
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date | Mon, 29 Jul 2024 18:49:25 +0000 |
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b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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1 # OMERO import images |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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2 |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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3 ## Set up user credentials on Galaxy to connect to other omero instance |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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4 |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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5 To enable users to set their credentials for this tool, |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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6 make sure the file `config/user_preferences_extra.yml` has the following section: |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
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7 |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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8 ``` |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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9 omero_account: |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
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10 description: Your OMERO instance connection credentials |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
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11 inputs: |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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12 - name: username |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
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13 label: Username |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
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14 type: text |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff
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15 required: False |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff
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16 - name: password |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff
changeset
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17 label: Password |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff
changeset
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18 type: password |
b3d29ef12aed
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff
changeset
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19 required: False |