Mercurial > repos > ufz > omero_import

annotate README.md @ 4:d0c0f3c95368 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 19d84fd5a372f1428e3e5670144881a56e8af8b2
author ufz
date Tue, 22 Oct 2024 11:53:53 +0000
parents b3d29ef12aed
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
1 # OMERO import images
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
2
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
3 ## Set up user credentials on Galaxy to connect to other omero instance
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
4
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
5 To enable users to set their credentials for this tool,
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
6 make sure the file `config/user_preferences_extra.yml` has the following section:
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
7
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
8 ```
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
9 omero_account:
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
10 description: Your OMERO instance connection credentials
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
11 inputs:
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
12 - name: username
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
13 label: Username
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
14 type: text
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
15 required: False
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
16 - name: password
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
17 label: Password
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
18 type: password
b3d29ef12aed planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero/omero_basic_upload commit 5497619aeb0dbc1e4313e6a10752ef220e7950c1
ufz
parents:
diff changeset
19 required: False