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view test-data/genomad_virus_genes/NC_018515.fasta.tabular @ 1:3a7f73d638ba draft default tip
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phi-toolkit commit 368e8a7322c9763c648637263d4695abc146be13
| author | ufz |
|---|---|
| date | Tue, 22 Jul 2025 11:09:24 +0000 |
| parents | 315c2ed31af1 |
| children |
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gene start end length strand gc_content genetic_code rbs_motif marker evalue bitscore uscg plasmid_hallmark virus_hallmark taxid taxname annotation_conjscan annotation_amr annotation_accessions annotation_description NC_018515.1|provirus_3418112_3436097_3127 3418112 3418687 576 -1 0.474 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_3418112_3436097_3128 3418979 3419323 345 -1 0.412 11 GGAGG GENOMAD.178485.VV 8.068e-52 178 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_3418112_3436097_3129 3419421 3420176 756 -1 0.463 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_3418112_3436097_3130 3420203 3420451 249 -1 0.434 11 AGGA GENOMAD.042597.VV 2.985e-31 117 0 0 0 2561 Caudoviricetes NA NA PF10779 Haemolysin XhlA NC_018515.1|provirus_3418112_3436097_3131 3420532 3420702 171 -1 0.316 11 AGGAGG GENOMAD.019319.VV 0.0001663 39 0 0 0 2561 Caudoviricetes NA NA PF09693;TIGR01669 phage uncharacterized protein, XkdX family NC_018515.1|provirus_3418112_3436097_3132 3420716 3421015 300 -1 0.360 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_3418112_3436097_3133 3421030 3422109 1080 -1 0.488 11 AGGAG GENOMAD.010477.VV 1.931e-16 84 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_3418112_3436097_3134 3422122 3422733 612 -1 0.431 11 AGxAGG/AGGxGG GENOMAD.018612.VV 2.241e-57 199 0 0 1 2561 Caudoviricetes NA NA PF10076;COG3778;TIGR02242 Uncharacterized protein YmfQ in lambdoid prophage, DUF2313 family NC_018515.1|provirus_3418112_3436097_3135 3422739 3423455 717 -1 0.480 11 GGAGG GENOMAD.072355.VV 1.988e-75 253 0 0 0 5262 Schitoviridae NA NA PF18454 Major tropism determinant N-terminal domain NC_018515.1|provirus_3418112_3436097_3136 3423468 3424490 1023 -1 0.475 11 AGGAGG GENOMAD.072355.VV 2.41e-07 55 0 0 0 5262 Schitoviridae NA NA PF18454 Major tropism determinant N-terminal domain NC_018515.1|provirus_3418112_3436097_3137 3424494 3424907 414 -1 0.435 11 GGxGG GENOMAD.105081.VV 2.709e-66 221 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_3418112_3436097_3138 3424912 3425949 1038 -1 0.480 11 AGGAGG GENOMAD.004833.VV 1.671e-45 171 0 0 1 2561 Caudoviricetes NA NA PF04865;COG3299 Baseplate J-like protein NC_018515.1|provirus_3418112_3436097_3139 3425949 3426350 402 -1 0.440 11 AGxAGG/AGGxGG GENOMAD.016318.VV 3.473e-37 137 0 0 0 2561 Caudoviricetes NA NA PF10934;COG4381;TIGR03357 Mu-like prophage protein gp46 NC_018515.1|provirus_3418112_3436097_3140 3426347 3426703 357 -1 0.457 11 GGA/GAG/AGG GENOMAD.020599.VV 1.753e-21 91 0 0 0 2561 Caudoviricetes NA NA PF10844 NA NC_018515.1|provirus_3418112_3436097_3141 3426703 3427689 987 -1 0.443 11 AGGAGG GENOMAD.018966.VV 5.985e-106 346 0 0 1 2561 Caudoviricetes NA NA PF14594;COG4379;TIGR03361;K06905 Mu-like prophage tail protein gpP NC_018515.1|provirus_3418112_3436097_3142 3427706 3428368 663 -1 0.448 11 AGxAGG/AGGxGG GENOMAD.015578.VV 2.506e-23 101 0 0 0 2561 Caudoviricetes NA NA PF06995;COG1652 Nucleoid-associated protein YgaU, contains BON and LysM domains NC_018515.1|provirus_3418112_3436097_3143 3428368 3430056 1689 -1 0.436 11 AGGAGG GENOMAD.032671.VV 1.142e-122 406 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_3418112_3436097_3144 3430684 3431106 423 -1 0.437 11 GGAGG GENOMAD.001212.VV 8.9e-47 165 0 0 1 2561 Caudoviricetes NA NA PF08890 Phage XkdN-like tail assembly chaperone protein, TAC NC_018515.1|provirus_3418112_3436097_3145 3431161 3431628 468 -1 0.459 11 GGA/GAG/AGG GENOMAD.011307.VV 3.196e-73 242 0 0 1 2561 Caudoviricetes NA NA PF09393 Phage tail tube protein NC_018515.1|provirus_3418112_3436097_3146 3431632 3432948 1317 -1 0.455 11 GGAGG GENOMAD.013578.VV 4.449e-94 317 0 0 1 2561 Caudoviricetes NA NA PF17481;PF04984;PF17482;COG4386 Mu-like prophage tail sheath protein gpL NC_018515.1|provirus_3418112_3436097_3147 3432950 3433132 183 -1 0.388 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_3418112_3436097_3148 3433125 3433544 420 -1 0.448 11 AGGAG GENOMAD.023771.VV 1.411e-24 101 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_3418112_3436097_3149 3434218 3434688 471 -1 0.410 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_3418112_3436097_3150 3435000 3435596 597 1 0.405 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_3418112_3436097_3151 3435618 3436097 480 1 0.352 11 AGGAG GENOMAD.123021.VV 8.264e-31 120 0 0 0 2561 Caudoviricetes NA NA PF06114;COG2856 IrrE N-terminal-like domain NC_018515.1|provirus_4659544_4694673_4266 4659544 4659789 246 -1 0.398 11 GGxGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4267 4659786 4660568 783 -1 0.415 11 AGGAGG GENOMAD.053051.VV 3.635e-13 72 0 0 0 2561 Caudoviricetes NA NA PF10772;PF02086;TIGR00571;COG0338 Bacteriophage HP1, Orf24; D12 class N6 adenine-specific DNA methyltransferase NC_018515.1|provirus_4659544_4694673_4268 4660808 4661533 726 1 0.310 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4269 4661559 4662848 1290 -1 0.354 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4270 4662851 4663681 831 -1 0.357 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4271 4663834 4664334 501 -1 0.435 11 AGGAGG GENOMAD.220913.VP 9.323e-12 65 0 0 1 2561 Caudoviricetes NA NA PF09682;TIGR01673 Bacteriophage holin of superfamily 6 (Holin_LLH) NC_018515.1|provirus_4659544_4694673_4272 4664379 4665224 846 -1 0.488 11 GGAG/GAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4273 4665235 4665600 366 -1 0.413 11 AGxAGG/AGGxGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4274 4665683 4665937 255 -1 0.412 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4275 4666125 4666301 177 -1 0.429 11 GGAGG GENOMAD.202651.VV 1.242e-28 108 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4276 4666298 4666576 279 -1 0.423 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4277 4666573 4667667 1095 -1 0.525 11 GGAG/GAGG GENOMAD.135924.VV 5.173e-50 185 0 0 0 4312 Hafunaviridae NA NA NA NA NC_018515.1|provirus_4659544_4694673_4278 4667682 4669058 1377 -1 0.439 11 GGAG/GAGG GENOMAD.007293.VV 1.173e-76 267 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_4659544_4694673_4279 4669065 4670156 1092 -1 0.412 11 GGxGG GENOMAD.006687.VV 4.266e-78 267 0 0 1 2561 Caudoviricetes NA NA PF14594;COG4926;TIGR01665 Siphovirus ReqiPepy6 Gp37-like protein NC_018515.1|provirus_4659544_4694673_4280 4670159 4671022 864 -1 0.403 11 AGxAGG/AGGxGG GENOMAD.009232.VV 5.496e-87 289 0 0 0 2561 Caudoviricetes NA NA PF16774;COG4722;TIGR01633 Phage-related protein NC_018515.1|provirus_4659544_4694673_4281 4671033 4673771 2739 -1 0.449 11 None GENOMAD.110013.VP 2.08e-93 332 0 0 1 2561 Caudoviricetes NA NA COG5280 Phage-related minor tail protein NC_018515.1|provirus_4659544_4694673_4282 4673768 4673995 228 -1 0.430 11 None GENOMAD.095592.VV 3.087e-06 45 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_4659544_4694673_4283 4674073 4674399 327 -1 0.404 11 GGAGG GENOMAD.044337.VV 2.719e-52 179 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_4659544_4694673_4284 4674442 4675005 564 -1 0.502 11 GGA/GAG/AGG GENOMAD.009652.VV 1.45e-80 265 0 0 1 2561 Caudoviricetes NA NA TIGR01537 NA NC_018515.1|provirus_4659544_4694673_4285 4675011 4675370 360 -1 0.444 11 AGGAGG GENOMAD.058243.VV 1.023e-51 178 0 0 1 2561 Caudoviricetes NA NA PF11367 NA NC_018515.1|provirus_4659544_4694673_4286 4675367 4675792 426 -1 0.465 11 GGxGG GENOMAD.072075.VV 6.875e-16 76 0 0 1 2561 Caudoviricetes NA NA PF11114;TIGR01725;COG5005 phage protein, HK97 gp10 family NC_018515.1|provirus_4659544_4694673_4287 4675793 4676104 312 -1 0.458 11 GGA/GAG/AGG GENOMAD.008635.VV 1.997e-29 113 0 0 1 2561 Caudoviricetes NA NA PF05521;TIGR01563;COG5614 phage head-tail adaptor, putative, SPP1 family NC_018515.1|provirus_4659544_4694673_4288 4676101 4676370 270 -1 0.393 11 GGAG/GAGG GENOMAD.053459.VV 1.209e-43 153 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_4659544_4694673_4289 4676371 4676568 198 -1 0.455 11 GGxGG GENOMAD.188189.VV 3.555e-29 110 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4290 4676592 4677815 1224 -1 0.483 11 AGGAGG GENOMAD.088359.VV 4.366e-19 93 0 0 1 2561 Caudoviricetes NA NA PF05065;PF18316;PF17078;TIGR01554;COG4653 phage major capsid protein, HK97 family NC_018515.1|provirus_4659544_4694673_4291 4677854 4678474 621 -1 0.470 11 AGGAGG GENOMAD.116539.VV 2.017e-19 89 0 0 1 2561 Caudoviricetes NA NA PF04586;PF05065;K06904;COG3740;TIGR01543 Phage head maturation protease NC_018515.1|provirus_4659544_4694673_4292 4678428 4679657 1230 -1 0.460 11 GGAG/GAGG GENOMAD.003590.VV 9.884e-09 60 0 0 1 2561 Caudoviricetes NA NA PF04860;TIGR01537;COG4695 phage portal protein, HK97 family NC_018515.1|provirus_4659544_4694673_4293 4679878 4681632 1755 -1 0.471 11 AGxAGG/AGGxGG GENOMAD.194580.VP 2.855e-27 121 0 0 1 2561 Caudoviricetes NA NA PF03354;PF05521;PF20441;COG4626;TIGR01563 Phage terminase-like protein, large subunit, contains N-terminal HTH domain NC_018515.1|provirus_4659544_4694673_4294 4681625 4682008 384 -1 0.464 11 GGAGG GENOMAD.092852.VV 8.987e-49 170 0 0 1 2561 Caudoviricetes NA NA TIGR01558 NA NC_018515.1|provirus_4659544_4694673_4295 4682094 4682456 363 -1 0.394 11 AGGA/GGAG/GAGG GENOMAD.080571.VV 4.962e-76 248 0 0 0 11831 Demerecviridae NA NA NA NA NC_018515.1|provirus_4659544_4694673_4296 4683479 4684264 786 1 0.359 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4297 4684476 4685324 849 1 0.269 11 AGGAG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4298 4685564 4686076 513 -1 0.454 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4299 4686432 4686794 363 -1 0.501 11 AGGAG(G)/GGAGG GENOMAD.151656.VP 8.696e-38 138 0 0 1 2561 Caudoviricetes NA NA PF17288;K06909;TIGR01547;COG1783 phage terminase, large subunit, PBSX family NC_018515.1|provirus_4659544_4694673_4300 4686791 4687312 522 -1 0.454 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4301 4687336 4688310 975 -1 0.463 11 AGGAGG GENOMAD.017981.VV 2.221e-42 161 0 0 0 2561 Caudoviricetes NA NA NA NA NC_018515.1|provirus_4659544_4694673_4302 4688325 4688492 168 -1 0.494 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4303 4688511 4689254 744 -1 0.440 11 GGA/GAG/AGG GENOMAD.129273.VC 1.957e-41 155 0 0 0 2561 Caudoviricetes NA NA PF12706;TIGR02651;COG1234;K06167 ribonuclease Z NC_018515.1|provirus_4659544_4694673_4304 4689256 4690083 828 -1 0.447 11 AGGAGG GENOMAD.121864.VP 4.873e-26 111 0 0 0 2561 Caudoviricetes NA NA PF03837;COG3723;K07455;TIGR00616 Recombinational DNA repair protein RecT NC_018515.1|provirus_4659544_4694673_4305 4690183 4690290 108 -1 0.426 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4306 4690287 4692251 1965 -1 0.439 11 GGA/GAG/AGG GENOMAD.182234.VP 4.932e-58 218 0 0 0 2561 Caudoviricetes NA NA PF13175;TIGR00634;COG1195;K03546 DNA repair protein RecN NC_018515.1|provirus_4659544_4694673_4307 4692248 4692634 387 -1 0.429 11 GGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4308 4692650 4692922 273 -1 0.502 11 None GENOMAD.199250.VV 1.281e-05 44 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4309 4692957 4693220 264 -1 0.432 11 AGxAGG/AGGxGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4310 4693210 4693476 267 -1 0.449 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4311 4693491 4693604 114 -1 0.465 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4312 4693681 4693836 156 -1 0.436 11 AGGAGG NA NA NA 0 0 0 1 NA NA NA NA NA NC_018515.1|provirus_4659544_4694673_4313 4693815 4694144 330 -1 0.415 11 None GENOMAD.169643.VC 1.05e-06 48 0 0 1 1 NA NA NA PF11242;TIGR02612;COG4197;K22299 mobile mystery protein A NC_018515.1|provirus_4659544_4694673_4314 4694266 4694673 408 1 0.395 11 AGGAGG GENOMAD.053307.VV 0.0005741 41 0 0 0 2561 Caudoviricetes NA NA PF13744;COG3655;TIGR02612;K18830 DNA-binding transcriptional regulator, XRE family