Mercurial > repos > ufz > saqc
annotate macros.xml @ 1:724dcbb35c9a draft default tip
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
author | ufz |
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date | Sat, 16 Aug 2025 11:43:23 +0000 |
parents | 55bbea0cdc60 |
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rev | line source |
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55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
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1 <macros> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
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2 <xml name="requirements"> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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3 <requirements> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
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4 <requirement type="package" version="@TOOL_VERSION@">saqc</requirement> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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5 </requirements> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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6 </xml> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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7 |
1
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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8 <token name="@TOOL_VERSION@">2.6.0</token> |
0
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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9 <token name="@VERSION_SUFFIX@">0</token> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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10 |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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11 <xml name="citations"> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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12 <citations> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
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13 <citation type="doi">https://doi.org/10.1016/j.envsoft.2023.105809</citation> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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14 </citations> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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15 </xml> |
55bbea0cdc60
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit 271a95aef4cbe6b85a3c5dae1db005bfacf4084b
ufz
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16 |
1
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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17 <xml name="field"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
parents:
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18 <param argument="field" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
parents:
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19 label="Field" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
parents:
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20 optional="false" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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21 value="" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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22 type="text" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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23 help="Variable to process"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
parents:
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24 </xml> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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25 |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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26 <xml name="field_multiple"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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27 <repeat name="field_repeat" title="field(s)" min="1"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
parents:
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28 <param argument="field" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
parents:
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29 label="Field" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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30 optional="false" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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31 value="" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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32 type="text" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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33 help="Variable to process"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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34 </repeat> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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35 </xml> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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36 |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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37 <xml name="flag"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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38 <param argument="flag" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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39 label="Flag" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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40 optional="true" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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41 value="255.0" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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42 type="float" |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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43 help="The flag value the function uses to mark observations"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
ufz
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44 </xml> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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45 |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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46 <xml name="saqc_tests"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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47 <tests> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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48 <expand macro="config_tests"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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49 <test> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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50 <param name="data" value="test1/data.csv" ftype="csv"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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51 <repeat name="methods_repeat"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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52 <conditional name="module_cond"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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53 <param name="module_select" value="outliers"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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54 <conditional name="method_cond"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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55 <param name="method_select" value="flagRange"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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56 <param name="field" value="SM2"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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57 <param name="max" value="60.0"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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58 <param name="min" value="10.0"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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59 |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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60 <param name="flag" value="255.0"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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61 </conditional> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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62 </conditional> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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63 </repeat> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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64 <repeat name="methods_repeat"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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65 <conditional name="module_cond"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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66 <param name="module_select" value="outliers"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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67 <conditional name="method_cond"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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68 |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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69 <param name="method_select" value="flagZScore"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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70 |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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71 <repeat name="field_repeat"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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72 <param name="field" value="SM2"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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73 </repeat> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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74 <param name="center" value="false"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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75 <conditional name="window_cond"> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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76 <param name="window_select_type" value="timedelta"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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77 <param name="window" value="30d"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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78 </conditional> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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79 <param name="thresh" value="3.5"/> |
724dcbb35c9a
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ commit b674325a07b6e964e25cd65967149018dc2671fe
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80 <param name="method" value="modified"/> |
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81 |
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82 <param name="flag" value="255.0"/> |
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83 </conditional> |
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84 </conditional> |
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85 </repeat> |
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86 <repeat name="methods_repeat"> |
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87 <conditional name="module_cond"> |
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88 <param name="module_select" value="tools"/> |
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89 <conditional name="method_cond"> |
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90 <param name="method_select" value="plot"/> |
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91 <param name="field" value="SM2"/> |
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92 <param name="path" value="test"/> |
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93 <conditional name="history_cond"> |
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94 <param name="history_select_type" value="valid" /> |
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95 <param name="history" value="valid" /> |
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96 </conditional> |
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97 <param name="mode" value="oneplot"/> |
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98 <param name="max_gap" value="" /> |
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99 <param name="xscope" value="" /> |
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100 <param name="yscope" value="" /> |
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101 <param name="dfilter" value="inf" /> |
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102 </conditional> |
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103 </conditional> |
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104 </repeat> |
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105 |
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106 <output name="output" value="test1/out.csv" ftype="csv"/> |
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107 <output name="config_out" ftype="txt"> |
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108 <assert_contents> |
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109 <has_n_lines n="4"/> |
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110 <has_n_columns n="2" sep=";"/> |
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111 <has_text_matching expression="flagRange.*max=60.0.*min=10.0"/> |
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112 <has_text_matching expression='flagZScore.*method="modified".*thresh=3.5.*window="30d"'/> |
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113 <has_text_matching expression='plot.*dfilter=float\('inf'\).*history="valid".*path="test"'/> |
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114 </assert_contents> |
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115 </output> |
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116 |
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117 <output_collection name="plots" type="list"> |
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118 <element name="test" ftype="png"> |
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119 <assert_contents> |
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120 <has_text text="PNG"/> |
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121 <has_size value="120k" delta="10k"/> |
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122 </assert_contents> |
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123 </element> |
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124 </output_collection> |
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125 </test> |
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126 </tests> |
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127 </xml> |
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128 </macros> |