comparison data_manager/vibrant_datamanager.xml @ 1:3f68072f2da6 draft

planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_vibrant commit c78bd5eafa3d9450305cc8b32ba9cf8c64c42ba7

0:200343b50d46

<tool id="vibrant_build_database" name="vibrant" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>database builder</description>
    <macros>
        <token name="@TOOL_VERSION@">1.2.1</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <token name="@PROFILE@">22.01</token>
    </macros>
    <xrefs>
        <xref type="bio.tools">VIBRANT</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">vibrant</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        set -eo pipefail; 
        download-db.sh vibrant_db &&
        cp '$dmjson' '$out_file'
    ]]></command>
    <configfiles>
        <configfile name="dmjson"><![CDATA[
{

1:3f68072f2da6

<tool id="vibrant_build_database" name="vibrant" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>database builder</description>
    <macros>
        <token name="@TOOL_VERSION@">1.2.1</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <token name="@PROFILE@">22.01</token>
    </macros>
    <xrefs>
        <xref type="bio.tools">VIBRANT</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">vibrant</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        set -eo pipefail; 
        mkdir -p '$out_file.extra_files_path'/vibrant_db &&
        download-db.sh '$out_file.extra_files_path'/vibrant_db &&
        cp '$dmjson' '$out_file'
    ]]></command>
    <configfiles>
        <configfile name="dmjson"><![CDATA[
{