Mercurial > repos > ufz > vibrant_build_database

changeset 1:3f68072f2da6 draft

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planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_vibrant commit c78bd5eafa3d9450305cc8b32ba9cf8c64c42ba7
author ufz
date Mon, 18 Nov 2024 15:26:23 +0000
parents 200343b50d46
children e0faddfd9cf9
files data_manager/vibrant_datamanager.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/vibrant_datamanager.xml	Mon Sep 16 09:52:54 2024 +0000
+++ b/data_manager/vibrant_datamanager.xml	Mon Nov 18 15:26:23 2024 +0000
@@ -2,7 +2,7 @@
     <description>database builder</description>
     <macros>
         <token name="@TOOL_VERSION@">1.2.1</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
         <token name="@PROFILE@">22.01</token>
     </macros>
     <xrefs>
@@ -13,7 +13,8 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         set -eo pipefail; 
-        download-db.sh vibrant_db &&
+        mkdir -p '$out_file.extra_files_path'/vibrant_db &&
+        download-db.sh '$out_file.extra_files_path'/vibrant_db &&
         cp '$dmjson' '$out_file'
     ]]></command>
     <configfiles>