Mercurial > repos > ufz > virsorter_build_database
annotate data_manager_conf.xml @ 1:ad63dbb3493a draft
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit c78bd5eafa3d9450305cc8b32ba9cf8c64c42ba7
author | ufz |
---|---|
date | Mon, 18 Nov 2024 15:26:28 +0000 |
parents | 863ba94fb6e4 |
children | c456ae8354f2 |
rev | line source |
---|---|
0
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
1 <data_managers> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
2 <data_manager tool_file="data_manager/virsorter_datamanager.xml" id="virsorter_build_database"> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
3 <data_table name="virsorter"> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
4 <output> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
5 <column name="value"/> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
6 <column name="name"/> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
7 <column name="virsorter_version"/> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
8 <column name="path" output_ref="out_file"> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
9 <move type="directory"> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
10 <source>${path}</source> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">virsorter/${path}</target> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
12 </move> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/virsorter/${path}</value_translation> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
14 <value_translation type="function">abspath</value_translation> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
15 </column> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
16 </output> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
17 </data_table> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
18 </data_manager> |
863ba94fb6e4
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff
changeset
|
19 </data_managers> |