annotate data_manager_conf.xml @ 2:c456ae8354f2 draft default tip

planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit 40d304560b0b732bcc2b6397a72964caf1a5a451
author ufz
date Wed, 18 Dec 2024 12:30:47 +0000
parents 863ba94fb6e4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
1 <data_managers>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
2 <data_manager tool_file="data_manager/virsorter_datamanager.xml" id="virsorter_build_database">
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
3 <data_table name="virsorter">
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
4 <output>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
5 <column name="value"/>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
6 <column name="name"/>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
7 <column name="virsorter_version"/>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
8 <column name="path" output_ref="out_file">
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
9 <move type="directory">
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
10 <source>${path}</source>
2
c456ae8354f2 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit 40d304560b0b732bcc2b6397a72964caf1a5a451
ufz
parents: 0
diff changeset
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">virsorter/${value}</target>
0
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
12 </move>
2
c456ae8354f2 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit 40d304560b0b732bcc2b6397a72964caf1a5a451
ufz
parents: 0
diff changeset
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/virsorter/${value}</value_translation>
0
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
14 <value_translation type="function">abspath</value_translation>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
15 </column>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
16 </output>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
17 </data_table>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
18 </data_manager>
863ba94fb6e4 planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_virsorter commit fdde667342e69dd11ef98029e0d6d3376d0d95c7
ufz
parents:
diff changeset
19 </data_managers>