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1 '''
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2 @author Chaitanya Guttula, Sumedha Ganjoo
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3 @see LICENSE (MIT style license file).
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4 '''
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5
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6 import os
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7
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8 '''
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9 Opens the toolconf.xml file and then adds the tool that is paased to it under Web Service tools
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10 '''
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11
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12 __author__=""
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13
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14 class editToolConfig1(object):
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15 def addTool(self,toolName):
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16 galaxyhome=os.environ.get('GALAXY_HOME')
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17 f1=open(galaxyhome+'/tool_conf.xml','r')
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18 f1.seek(0,0)
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19 f2=open(galaxyhome+'/tool_conf_backup.xml','w')
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20 f2.seek(0,0)
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21
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22 #copy everything from tool_conf.xml upto the section 'Web Service Tools' into another file f2
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23 line = f1.readline()
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24 f2.write(line)
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25
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26 lineStripped=line.lstrip()
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27 lineStripped=lineStripped.rstrip()
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28
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29 #add the one-time Web service invocation tool under Web Service Tools section
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30 while not lineStripped == '<section name="Web Service Tools" id="WebServices">':
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31 line = f1.readline()
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32 f2.write(line)
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33 lineStripped = line.lstrip()
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34 lineStripped=lineStripped.rstrip()
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35 else:
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36 print line
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37
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38 f2.write(' <tool file="WebServiceToolWorkflow_REST_SOAP/clients/'+toolName + '.xml"/>\n')
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39
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40 #copy rest of tool_conf.xml file f2
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41 while not lineStripped == '</toolbox>':
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42 line = f1.readline()
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43 f2.write(line)
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44 lineStripped = line.lstrip()
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45 lineStripped=lineStripped.rstrip()
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46 else:
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47 print line
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48
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49 ##close f1 and f2
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50 f1.close()
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51 f2.close()
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52
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53 ##interchange modes of f1 and f2
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54 f1=open(galaxyhome+'/tool_conf.xml','w')
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55 f1.seek(0,0)
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56 f2=open(galaxyhome+'/tool_conf_backup.xml','r')
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57 f2.seek(0,0)
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58
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59 line = f2.readline()
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60 f1.write(line)
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61
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62 lineStripped=line.lstrip()
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63 lineStripped = lineStripped.rstrip()
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64
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65 ##write entire f2 into f1 (reverse roles)
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66 while not lineStripped == '</toolbox>':
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67 line = f2.readline()
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68 f1.write(line)
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69 lineStripped = line.lstrip()
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70 lineStripped = lineStripped.rstrip()
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71 else:
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72 print line
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73
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74 f1.close()
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75 f2.close()
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