Mercurial > repos > uga-galaxy-group > webservice_toolsuite_v1_1
comparison WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/workflowclients/client_14.xml~ @ 0:049760c677de default tip
Galaxy WSExtensions added successfully
author | uga-galaxy-group |
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date | Tue, 05 Jul 2011 19:34:18 -0400 |
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1 <tool id="client_14" name="run"> | |
2 <description> Client for operation : run , Web service: wublast.wublast_services </description> | |
3 <command interpreter="python"> | |
4 client_1.py | |
5 #if $cond_source.optional_param_source=="no": | |
6 $output | |
7 $servicetype | |
8 $url | |
9 $method | |
10 wublast.wublast_services run | |
11 "_parameters|_sequence" | |
12 #if $source0.source0_source=="user": | |
13 $source0.user_param0 | |
14 #else: | |
15 fileInput | |
16 $source0.cached_param0 | |
17 #end if | |
18 "_parameters|_stype" | |
19 #if $source1.source1_source=="user": | |
20 $source1.user_param1 | |
21 #else: | |
22 fileInput | |
23 $source1.cached_param1 | |
24 #end if | |
25 "_parameters|_program" | |
26 #if $source2.source2_source=="user": | |
27 $source2.user_param2 | |
28 #else: | |
29 fileInput | |
30 $source2.cached_param2 | |
31 #end if | |
32 "_email" | |
33 #if $source3.source3_source=="user": | |
34 $source3.user_param3 | |
35 #else: | |
36 fileInput | |
37 $source3.cached_param3 | |
38 #end if | |
39 "_parameters|_database|_string|$|" | |
40 #if $source4.source4_source=="user": | |
41 $source4.user_param4 | |
42 #else: | |
43 fileInput | |
44 $source4.cached_param4 | |
45 #end if | |
46 #else: | |
47 $output | |
48 $servicetype | |
49 $url | |
50 $method | |
51 wublast.wublast_services run | |
52 "_parameters|_sequence" | |
53 #if $source0.source0_source=="user": | |
54 $source0.user_param0 | |
55 #else: | |
56 fileInput | |
57 $source0.cached_param0 | |
58 #end if | |
59 "_parameters|_stype" | |
60 #if $source1.source1_source=="user": | |
61 $source1.user_param1 | |
62 #else: | |
63 fileInput | |
64 $source1.cached_param1 | |
65 #end if | |
66 "_parameters|_program" | |
67 #if $source2.source2_source=="user": | |
68 $source2.user_param2 | |
69 #else: | |
70 fileInput | |
71 $source2.cached_param2 | |
72 #end if | |
73 "_email" | |
74 #if $source3.source3_source=="user": | |
75 $source3.user_param3 | |
76 #else: | |
77 fileInput | |
78 $source3.cached_param3 | |
79 #end if | |
80 "_parameters|_database|_string|$|" | |
81 #if $source4.source4_source=="user": | |
82 $source4.user_param4 | |
83 #else: | |
84 fileInput | |
85 $source4.cached_param4 | |
86 #end if | |
87 "_parameters|_sensitivity" | |
88 #if $cond_source.source5.source5_source=="user": | |
89 $cond_source.source5.user_param5 | |
90 #else: | |
91 fileInput | |
92 $cond_source.source5.cached_param5 | |
93 #end if | |
94 "_parameters|_topcombon" | |
95 #if $cond_source.source6.source6_source=="user": | |
96 $cond_source.source6.user_param6 | |
97 #else: | |
98 fileInput | |
99 $cond_source.source6.cached_param6 | |
100 #end if | |
101 "_parameters|_filter" | |
102 #if $cond_source.source7.source7_source=="user": | |
103 $cond_source.source7.user_param7 | |
104 #else: | |
105 fileInput | |
106 $cond_source.source7.cached_param7 | |
107 #end if | |
108 "_parameters|_alignments" | |
109 #if $cond_source.source8.source8_source=="user": | |
110 $cond_source.source8.user_param8 | |
111 #else: | |
112 fileInput | |
113 $cond_source.source8.cached_param8 | |
114 #end if | |
115 "_parameters|_scores" | |
116 #if $cond_source.source9.source9_source=="user": | |
117 $cond_source.source9.user_param9 | |
118 #else: | |
119 fileInput | |
120 $cond_source.source9.cached_param9 | |
121 #end if | |
122 "_parameters|_viewfilter" | |
123 #if $cond_source.source10.source10_source=="user": | |
124 $cond_source.source10.user_param10 | |
125 #else: | |
126 fileInput | |
127 $cond_source.source10.cached_param10 | |
128 #end if | |
129 "_parameters|_sort" | |
130 #if $cond_source.source11.source11_source=="user": | |
131 $cond_source.source11.user_param11 | |
132 #else: | |
133 fileInput | |
134 $cond_source.source11.cached_param11 | |
135 #end if | |
136 "_parameters|_strand" | |
137 #if $cond_source.source12.source12_source=="user": | |
138 $cond_source.source12.user_param12 | |
139 #else: | |
140 fileInput | |
141 $cond_source.source12.cached_param12 | |
142 #end if | |
143 "_parameters|_align" | |
144 #if $cond_source.source13.source13_source=="user": | |
145 $cond_source.source13.user_param13 | |
146 #else: | |
147 fileInput | |
148 $cond_source.source13.cached_param13 | |
149 #end if | |
150 "_parameters|_matrix" | |
151 #if $cond_source.source14.source14_source=="user": | |
152 $cond_source.source14.user_param14 | |
153 #else: | |
154 fileInput | |
155 $cond_source.source14.cached_param14 | |
156 #end if | |
157 "_title" | |
158 #if $cond_source.source15.source15_source=="user": | |
159 $cond_source.source15.user_param15 | |
160 #else: | |
161 fileInput | |
162 $cond_source.source15.cached_param15 | |
163 #end if | |
164 "_parameters|_stats" | |
165 #if $cond_source.source16.source16_source=="user": | |
166 $cond_source.source16.user_param16 | |
167 #else: | |
168 fileInput | |
169 $cond_source.source16.cached_param16 | |
170 #end if | |
171 "_parameters|_exp" | |
172 #if $cond_source.source17.source17_source=="user": | |
173 $cond_source.source17.user_param17 | |
174 #else: | |
175 fileInput | |
176 $cond_source.source17.cached_param17 | |
177 #end if | |
178 #end if | |
179 </command> | |
180 <inputs> | |
181 <param name="servicetype" type="hidden" value="SOAP" /> | |
182 <param name="url" type="hidden" value="http://www.cs.uga.edu/~guttula/wublast.wsdl" /> | |
183 <param name="method" type="hidden" value="run" /> | |
184 <conditional name="source0"> | |
185 <param name="source0_source" type="select" label="sequence Source"> | |
186 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
187 <option value="user">User will enter the param value</option> | |
188 </param> | |
189 <when value="user"> | |
190 <param format="text" size = "150" name = "user_param0" type="text" label="Enter sequence" help="see tip below" /> | |
191 </when> | |
192 <when value="cached"> | |
193 <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter sequence"/> | |
194 </when> | |
195 </conditional><conditional name="source1"> | |
196 <param name="source1_source" type="select" label="stype Source"> | |
197 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
198 <option value="user">User will enter the param value</option> | |
199 </param> | |
200 <when value="user"> | |
201 <param format="text" size = "150" name = "user_param1" type="text" label="Enter stype" help="see tip below" /> | |
202 </when> | |
203 <when value="cached"> | |
204 <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter stype"/> | |
205 </when> | |
206 </conditional><conditional name="source2"> | |
207 <param name="source2_source" type="select" label="program Source"> | |
208 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
209 <option value="user">User will enter the param value</option> | |
210 </param> | |
211 <when value="user"> | |
212 <param format="text" size = "150" name = "user_param2" type="text" label="Enter program" help="see tip below" /> | |
213 </when> | |
214 <when value="cached"> | |
215 <param name = "cached_param2" type="data" label="Choose the step from which to get the parameter program"/> | |
216 </when> | |
217 </conditional><conditional name="source3"> | |
218 <param name="source3_source" type="select" label="email Source"> | |
219 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
220 <option value="user">User will enter the param value</option> | |
221 </param> | |
222 <when value="user"> | |
223 <param format="text" size = "150" name = "user_param3" type="text" label="Enter email" help="see tip below" /> | |
224 </when> | |
225 <when value="cached"> | |
226 <param name = "cached_param3" type="data" label="Choose the step from which to get the parameter email"/> | |
227 </when> | |
228 </conditional><conditional name="source4"> | |
229 <param name="source4_source" type="select" label="database Source"> | |
230 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
231 <option value="user">User will enter the param value</option> | |
232 </param> | |
233 <when value="user"> | |
234 <param format="text" size = "150" name = "user_param4" type="text" label="Enter database" help="see tip below" /> | |
235 </when> | |
236 <when value="cached"> | |
237 <param name = "cached_param4" type="data" label="Choose the step from which to get the parameter database"/> | |
238 </when> | |
239 </conditional> <conditional name="cond_source"> | |
240 <param name="optional_param_source" type="select" label="Display Additional Parameters"> | |
241 <option value="no" selected="true">no</option> | |
242 <option value="yes">yes</option> | |
243 </param> | |
244 <when value="no"> | |
245 </when> | |
246 <when value="yes"> | |
247 | |
248 <conditional name="source5"> | |
249 <param name="source5_source" type="select" label="sensitivity Source"> | |
250 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
251 <option value="user">User will enter the param value</option> | |
252 </param> | |
253 <when value="user"><param format="text" size = "150" name = "user_param5" type="text" label="Enter sensitivity" help="see tip below" /> | |
254 </when> | |
255 <when value="cached"> | |
256 <param name = "cached_param5" type="data" label="Choose the step from which to get the parameter sensitivity"/> | |
257 </when> | |
258 </conditional> | |
259 | |
260 <conditional name="source6"> | |
261 <param name="source6_source" type="select" label="topcombon Source"> | |
262 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
263 <option value="user">User will enter the param value</option> | |
264 </param> | |
265 <when value="user"><param format="text" size = "150" name = "user_param6" type="text" label="Enter topcombon" help="see tip below" /> | |
266 </when> | |
267 <when value="cached"> | |
268 <param name = "cached_param6" type="data" label="Choose the step from which to get the parameter topcombon"/> | |
269 </when> | |
270 </conditional> | |
271 | |
272 <conditional name="source7"> | |
273 <param name="source7_source" type="select" label="filter Source"> | |
274 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
275 <option value="user">User will enter the param value</option> | |
276 </param> | |
277 <when value="user"><param format="text" size = "150" name = "user_param7" type="text" label="Enter filter" help="see tip below" /> | |
278 </when> | |
279 <when value="cached"> | |
280 <param name = "cached_param7" type="data" label="Choose the step from which to get the parameter filter"/> | |
281 </when> | |
282 </conditional> | |
283 | |
284 <conditional name="source8"> | |
285 <param name="source8_source" type="select" label="alignments Source"> | |
286 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
287 <option value="user">User will enter the param value</option> | |
288 </param> | |
289 <when value="user"><param format="text" size = "150" name = "user_param8" type="text" label="Enter alignments" help="see tip below" /> | |
290 </when> | |
291 <when value="cached"> | |
292 <param name = "cached_param8" type="data" label="Choose the step from which to get the parameter alignments"/> | |
293 </when> | |
294 </conditional> | |
295 | |
296 <conditional name="source9"> | |
297 <param name="source9_source" type="select" label="scores Source"> | |
298 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
299 <option value="user">User will enter the param value</option> | |
300 </param> | |
301 <when value="user"><param format="text" size = "150" name = "user_param9" type="text" label="Enter scores" help="see tip below" /> | |
302 </when> | |
303 <when value="cached"> | |
304 <param name = "cached_param9" type="data" label="Choose the step from which to get the parameter scores"/> | |
305 </when> | |
306 </conditional> | |
307 | |
308 <conditional name="source10"> | |
309 <param name="source10_source" type="select" label="viewfilter Source"> | |
310 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
311 <option value="user">User will enter the param value</option> | |
312 </param> | |
313 <when value="user"><param format="text" size = "150" name = "user_param10" type="text" label="Enter viewfilter" help="see tip below" /> | |
314 </when> | |
315 <when value="cached"> | |
316 <param name = "cached_param10" type="data" label="Choose the step from which to get the parameter viewfilter"/> | |
317 </when> | |
318 </conditional> | |
319 | |
320 <conditional name="source11"> | |
321 <param name="source11_source" type="select" label="sort Source"> | |
322 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
323 <option value="user">User will enter the param value</option> | |
324 </param> | |
325 <when value="user"><param format="text" size = "150" name = "user_param11" type="text" label="Enter sort" help="see tip below" /> | |
326 </when> | |
327 <when value="cached"> | |
328 <param name = "cached_param11" type="data" label="Choose the step from which to get the parameter sort"/> | |
329 </when> | |
330 </conditional> | |
331 | |
332 <conditional name="source12"> | |
333 <param name="source12_source" type="select" label="strand Source"> | |
334 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
335 <option value="user">User will enter the param value</option> | |
336 </param> | |
337 <when value="user"><param format="text" size = "150" name = "user_param12" type="text" label="Enter strand" help="see tip below" /> | |
338 </when> | |
339 <when value="cached"> | |
340 <param name = "cached_param12" type="data" label="Choose the step from which to get the parameter strand"/> | |
341 </when> | |
342 </conditional> | |
343 | |
344 <conditional name="source13"> | |
345 <param name="source13_source" type="select" label="align Source"> | |
346 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
347 <option value="user">User will enter the param value</option> | |
348 </param> | |
349 <when value="user"><param format="text" size = "150" name = "user_param13" type="text" label="Enter align" help="see tip below" /> | |
350 </when> | |
351 <when value="cached"> | |
352 <param name = "cached_param13" type="data" label="Choose the step from which to get the parameter align"/> | |
353 </when> | |
354 </conditional> | |
355 | |
356 <conditional name="source14"> | |
357 <param name="source14_source" type="select" label="matrix Source"> | |
358 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
359 <option value="user">User will enter the param value</option> | |
360 </param> | |
361 <when value="user"><param format="text" size = "150" name = "user_param14" type="text" label="Enter matrix" help="see tip below" /> | |
362 </when> | |
363 <when value="cached"> | |
364 <param name = "cached_param14" type="data" label="Choose the step from which to get the parameter matrix"/> | |
365 </when> | |
366 </conditional> | |
367 | |
368 <conditional name="source15"> | |
369 <param name="source15_source" type="select" label="title Source"> | |
370 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
371 <option value="user">User will enter the param value</option> | |
372 </param> | |
373 <when value="user"><param format="text" size = "150" name = "user_param15" type="text" label="Enter title" help="see tip below" /> | |
374 </when> | |
375 <when value="cached"> | |
376 <param name = "cached_param15" type="data" label="Choose the step from which to get the parameter title"/> | |
377 </when> | |
378 </conditional> | |
379 | |
380 <conditional name="source16"> | |
381 <param name="source16_source" type="select" label="stats Source"> | |
382 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
383 <option value="user">User will enter the param value</option> | |
384 </param> | |
385 <when value="user"><param format="text" size = "150" name = "user_param16" type="text" label="Enter stats" help="see tip below" /> | |
386 </when> | |
387 <when value="cached"> | |
388 <param name = "cached_param16" type="data" label="Choose the step from which to get the parameter stats"/> | |
389 </when> | |
390 </conditional> | |
391 | |
392 <conditional name="source17"> | |
393 <param name="source17_source" type="select" label="exp Source"> | |
394 <option value="cached" selected="true">Param value will be taken from previous step</option> | |
395 <option value="user">User will enter the param value</option> | |
396 </param> | |
397 <when value="user"><param format="text" size = "150" name = "user_param17" type="text" label="Enter exp" help="see tip below" /> | |
398 </when> | |
399 <when value="cached"> | |
400 <param name = "cached_param17" type="data" label="Choose the step from which to get the parameter exp"/> | |
401 </when> | |
402 </conditional> | |
403 </when> | |
404 </conditional> | |
405 </inputs> | |
406 <outputs> | |
407 <data format="tabular" name="output" /> | |
408 </outputs> | |
409 <help> | |
410 | |
411 .. class:: infomark | |
412 | |
413 **TIP:** About sequence: type is String | |
414 | |
415 .. class:: infomark | |
416 | |
417 **TIP:** About stype: type is String | |
418 | |
419 .. class:: infomark | |
420 | |
421 **TIP:** About program: type is String | |
422 | |
423 .. class:: infomark | |
424 | |
425 **TIP:** About email: type is String | |
426 | |
427 .. class:: infomark | |
428 | |
429 **TIP:** About database: type is String | |
430 </help> | |
431 </tool> |