Mercurial > repos > uga-galaxy-group > webservice_toolsuite_v1_1
view WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/workflowclients/client_14.xml~ @ 0:049760c677de default tip
Galaxy WSExtensions added successfully
author | uga-galaxy-group |
---|---|
date | Tue, 05 Jul 2011 19:34:18 -0400 |
parents | |
children |
line wrap: on
line source
<tool id="client_14" name="run"> <description> Client for operation : run , Web service: wublast.wublast_services </description> <command interpreter="python"> client_1.py #if $cond_source.optional_param_source=="no": $output $servicetype $url $method wublast.wublast_services run "_parameters|_sequence" #if $source0.source0_source=="user": $source0.user_param0 #else: fileInput $source0.cached_param0 #end if "_parameters|_stype" #if $source1.source1_source=="user": $source1.user_param1 #else: fileInput $source1.cached_param1 #end if "_parameters|_program" #if $source2.source2_source=="user": $source2.user_param2 #else: fileInput $source2.cached_param2 #end if "_email" #if $source3.source3_source=="user": $source3.user_param3 #else: fileInput $source3.cached_param3 #end if "_parameters|_database|_string|$|" #if $source4.source4_source=="user": $source4.user_param4 #else: fileInput $source4.cached_param4 #end if #else: $output $servicetype $url $method wublast.wublast_services run "_parameters|_sequence" #if $source0.source0_source=="user": $source0.user_param0 #else: fileInput $source0.cached_param0 #end if "_parameters|_stype" #if $source1.source1_source=="user": $source1.user_param1 #else: fileInput $source1.cached_param1 #end if "_parameters|_program" #if $source2.source2_source=="user": $source2.user_param2 #else: fileInput $source2.cached_param2 #end if "_email" #if $source3.source3_source=="user": $source3.user_param3 #else: fileInput $source3.cached_param3 #end if "_parameters|_database|_string|$|" #if $source4.source4_source=="user": $source4.user_param4 #else: fileInput $source4.cached_param4 #end if "_parameters|_sensitivity" #if $cond_source.source5.source5_source=="user": $cond_source.source5.user_param5 #else: fileInput $cond_source.source5.cached_param5 #end if "_parameters|_topcombon" #if $cond_source.source6.source6_source=="user": $cond_source.source6.user_param6 #else: fileInput $cond_source.source6.cached_param6 #end if "_parameters|_filter" #if $cond_source.source7.source7_source=="user": $cond_source.source7.user_param7 #else: fileInput $cond_source.source7.cached_param7 #end if "_parameters|_alignments" #if $cond_source.source8.source8_source=="user": $cond_source.source8.user_param8 #else: fileInput $cond_source.source8.cached_param8 #end if "_parameters|_scores" #if $cond_source.source9.source9_source=="user": $cond_source.source9.user_param9 #else: fileInput $cond_source.source9.cached_param9 #end if "_parameters|_viewfilter" #if $cond_source.source10.source10_source=="user": $cond_source.source10.user_param10 #else: fileInput $cond_source.source10.cached_param10 #end if "_parameters|_sort" #if $cond_source.source11.source11_source=="user": $cond_source.source11.user_param11 #else: fileInput $cond_source.source11.cached_param11 #end if "_parameters|_strand" #if $cond_source.source12.source12_source=="user": $cond_source.source12.user_param12 #else: fileInput $cond_source.source12.cached_param12 #end if "_parameters|_align" #if $cond_source.source13.source13_source=="user": $cond_source.source13.user_param13 #else: fileInput $cond_source.source13.cached_param13 #end if "_parameters|_matrix" #if $cond_source.source14.source14_source=="user": $cond_source.source14.user_param14 #else: fileInput $cond_source.source14.cached_param14 #end if "_title" #if $cond_source.source15.source15_source=="user": $cond_source.source15.user_param15 #else: fileInput $cond_source.source15.cached_param15 #end if "_parameters|_stats" #if $cond_source.source16.source16_source=="user": $cond_source.source16.user_param16 #else: fileInput $cond_source.source16.cached_param16 #end if "_parameters|_exp" #if $cond_source.source17.source17_source=="user": $cond_source.source17.user_param17 #else: fileInput $cond_source.source17.cached_param17 #end if #end if </command> <inputs> <param name="servicetype" type="hidden" value="SOAP" /> <param name="url" type="hidden" value="http://www.cs.uga.edu/~guttula/wublast.wsdl" /> <param name="method" type="hidden" value="run" /> <conditional name="source0"> <param name="source0_source" type="select" label="sequence Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"> <param format="text" size = "150" name = "user_param0" type="text" label="Enter sequence" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter sequence"/> </when> </conditional><conditional name="source1"> <param name="source1_source" type="select" label="stype Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"> <param format="text" size = "150" name = "user_param1" type="text" label="Enter stype" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter stype"/> </when> </conditional><conditional name="source2"> <param name="source2_source" type="select" label="program Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"> <param format="text" size = "150" name = "user_param2" type="text" label="Enter program" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param2" type="data" label="Choose the step from which to get the parameter program"/> </when> </conditional><conditional name="source3"> <param name="source3_source" type="select" label="email Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"> <param format="text" size = "150" name = "user_param3" type="text" label="Enter email" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param3" type="data" label="Choose the step from which to get the parameter email"/> </when> </conditional><conditional name="source4"> <param name="source4_source" type="select" label="database Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"> <param format="text" size = "150" name = "user_param4" type="text" label="Enter database" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param4" type="data" label="Choose the step from which to get the parameter database"/> </when> </conditional> <conditional name="cond_source"> <param name="optional_param_source" type="select" label="Display Additional Parameters"> <option value="no" selected="true">no</option> <option value="yes">yes</option> </param> <when value="no"> </when> <when value="yes"> <conditional name="source5"> <param name="source5_source" type="select" label="sensitivity Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param5" type="text" label="Enter sensitivity" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param5" type="data" label="Choose the step from which to get the parameter sensitivity"/> </when> </conditional> <conditional name="source6"> <param name="source6_source" type="select" label="topcombon Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param6" type="text" label="Enter topcombon" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param6" type="data" label="Choose the step from which to get the parameter topcombon"/> </when> </conditional> <conditional name="source7"> <param name="source7_source" type="select" label="filter Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param7" type="text" label="Enter filter" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param7" type="data" label="Choose the step from which to get the parameter filter"/> </when> </conditional> <conditional name="source8"> <param name="source8_source" type="select" label="alignments Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param8" type="text" label="Enter alignments" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param8" type="data" label="Choose the step from which to get the parameter alignments"/> </when> </conditional> <conditional name="source9"> <param name="source9_source" type="select" label="scores Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param9" type="text" label="Enter scores" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param9" type="data" label="Choose the step from which to get the parameter scores"/> </when> </conditional> <conditional name="source10"> <param name="source10_source" type="select" label="viewfilter Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param10" type="text" label="Enter viewfilter" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param10" type="data" label="Choose the step from which to get the parameter viewfilter"/> </when> </conditional> <conditional name="source11"> <param name="source11_source" type="select" label="sort Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param11" type="text" label="Enter sort" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param11" type="data" label="Choose the step from which to get the parameter sort"/> </when> </conditional> <conditional name="source12"> <param name="source12_source" type="select" label="strand Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param12" type="text" label="Enter strand" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param12" type="data" label="Choose the step from which to get the parameter strand"/> </when> </conditional> <conditional name="source13"> <param name="source13_source" type="select" label="align Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param13" type="text" label="Enter align" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param13" type="data" label="Choose the step from which to get the parameter align"/> </when> </conditional> <conditional name="source14"> <param name="source14_source" type="select" label="matrix Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param14" type="text" label="Enter matrix" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param14" type="data" label="Choose the step from which to get the parameter matrix"/> </when> </conditional> <conditional name="source15"> <param name="source15_source" type="select" label="title Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param15" type="text" label="Enter title" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param15" type="data" label="Choose the step from which to get the parameter title"/> </when> </conditional> <conditional name="source16"> <param name="source16_source" type="select" label="stats Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param16" type="text" label="Enter stats" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param16" type="data" label="Choose the step from which to get the parameter stats"/> </when> </conditional> <conditional name="source17"> <param name="source17_source" type="select" label="exp Source"> <option value="cached" selected="true">Param value will be taken from previous step</option> <option value="user">User will enter the param value</option> </param> <when value="user"><param format="text" size = "150" name = "user_param17" type="text" label="Enter exp" help="see tip below" /> </when> <when value="cached"> <param name = "cached_param17" type="data" label="Choose the step from which to get the parameter exp"/> </when> </conditional> </when> </conditional> </inputs> <outputs> <data format="tabular" name="output" /> </outputs> <help> .. class:: infomark **TIP:** About sequence: type is String .. class:: infomark **TIP:** About stype: type is String .. class:: infomark **TIP:** About program: type is String .. class:: infomark **TIP:** About email: type is String .. class:: infomark **TIP:** About database: type is String </help> </tool>