Mercurial > repos > ulfschaefer > package_python_2_7_pyvcf_0_6_7
comparison tool_dependencies.xml @ 1:ed025c662e59 draft default tip
Uploaded
| author | ulfschaefer |
|---|---|
| date | Fri, 18 Dec 2015 07:28:57 -0500 |
| parents | f6d05f9a22bf |
| children |
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| 0:f6d05f9a22bf | 1:ed025c662e59 |
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| 1 <?xml version='1.0' encoding='utf-8'?> | 1 <?xml version='1.0' encoding='utf-8'?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="python" version="2.7.10"> | 3 <package name="python" version="2.7.10"> |
| 4 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="pyvcf" version="0.6.7"> | 6 <package name="pyvcf" version="0.6.7"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action> | 9 <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action> |
| 10 <action type="set_environment_for_install"> | |
| 11 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
| 12 <package name="python" version="2.7.10" /> | |
| 13 </repository> | |
| 14 </action> | |
| 10 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 15 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 16 <action type="make_directory">$INSTALL_DIR/lib/python/bin</action> | |
| 11 <action type="shell_command"> | 17 <action type="shell_command"> |
| 12 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | 18 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
| 13 python setup.py install --install-lib $INSTALL_DIR/lib/python | 19 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/lib/python/bin |
| 14 </action> | 20 </action> |
| 15 <action type="set_environment"> | 21 <action type="set_environment"> |
| 16 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | 22 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
| 23 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/lib/python/bin</environment_variable> | |
| 17 <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable> | 24 <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable> |
| 18 </action> | 25 </action> |
| 19 </actions> | 26 </actions> |
| 20 </install> | 27 </install> |
| 21 <readme> | 28 <readme> |
| 22 This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF) | 29 This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF) |
| 23 package for use with python 2.7.10. | 30 package for use with python 2.7.10. |
| 24 | 31 |
| 25 The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF | 32 The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF |
| 26 </readme> | 33 </readme> |
| 27 </package> | 34 </package> |
| 28 </tool_dependency> | 35 </tool_dependency> |