Mercurial > repos > ulfschaefer > package_python_2_7_pyvcf_0_6_7
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author | ulfschaefer |
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date | Fri, 11 Dec 2015 09:34:42 -0500 |
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children | ed025c662e59 |
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<?xml version='1.0' encoding='utf-8'?> <tool_dependency> <package name="python" version="2.7.10"> <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="pyvcf" version="0.6.7"> <install version="1.0"> <actions> <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command"> export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python </action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable> </action> </actions> </install> <readme> This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF) package for use with python 2.7.10. The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF </readme> </package> </tool_dependency>