Mercurial > repos > ulfschaefer > package_python_2_7_pyvcf_0_6_7
changeset 0:f6d05f9a22bf draft
Uploaded
| author | ulfschaefer |
|---|---|
| date | Fri, 11 Dec 2015 09:34:42 -0500 |
| parents | |
| children | ed025c662e59 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 28 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Dec 11 09:34:42 2015 -0500 @@ -0,0 +1,28 @@ +<?xml version='1.0' encoding='utf-8'?> +<tool_dependency> + <package name="python" version="2.7.10"> + <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="pyvcf" version="0.6.7"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + python setup.py install --install-lib $INSTALL_DIR/lib/python + </action> + <action type="set_environment"> + <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + <readme> + This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF) + package for use with python 2.7.10. + + The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF + </readme> + </package> +</tool_dependency>