0
|
1 <?xml version='1.0' encoding='utf-8'?>
|
|
2 <tool_dependency>
|
|
3 <package name="python" version="2.7.10">
|
|
4 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
5 </package>
|
|
6 <package name="pyvcf" version="0.6.8dev">
|
|
7 <install version="1.0">
|
|
8 <actions>
|
|
9 <action type="download_by_url">https://github.com/jamescasbon/PyVCF/archive/0eb779559e74faa14fae609c8864874ab8321c7e.tar.gz</action>
|
|
10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
|
2
|
11 <action type="make_directory">$INSTALL_DIR/lib/python/bin</action>
|
0
|
12 <action type="shell_command">
|
|
13 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&
|
2
|
14 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/lib/python/bin
|
0
|
15 </action>
|
|
16 <action type="set_environment">
|
|
17 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
|
2
|
18 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/lib/python/bin</environment_variable>
|
0
|
19 <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
|
|
20 </action>
|
|
21 </actions>
|
|
22 </install>
|
|
23 <readme>
|
|
24 This Galaxy Tool shed package installs a defined commit
|
|
25 (0eb779559e74faa14fae609c8864874ab8321c7e) of the 0.6.8dev version of PyVCF for use with python 2.7.10.
|
|
26
|
|
27 The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF
|
|
28 </readme>
|
|
29 </package>
|
|
30 </tool_dependency>
|