Mercurial > repos > urgi-team > vcfgandalftools

diff tool_dependencies.xml @ 0:3552a8d9f51c draft

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author urgi-team
date Tue, 10 Nov 2015 08:30:56 -0500
parents
children cfd4eaadad42
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Nov 10 08:30:56 2015 -0500
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="VCF_Gandalf_Tools" version="1.0">
+		<install version="1.0">
+			<actions>
+				<action type="download_by_url">http://10.0.0.108/VCFtools-1.2.tar.gz</action>
+				<action type="shell_command">python setup_VCFtools.py install</action>
+				<action type="move_directory_files">
+					<source_directory>.</source_directory>
+					<destination_directory>$INSTALL_DIR</destination_directory>
+				</action>
+				<action type="set_environment">
+					<environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+				</action>
+			</actions>
+		</install>
+	</package>
+</tool_dependency>