Mercurial > repos > vimalkumarvelayudhan > riboplot
annotate riboplot.egg-info/PKG-INFO @ 19:6e3b13906b54
Use packages from the test toolshed. Add bedtools dependency
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Fri, 28 Aug 2015 11:07:26 +0100 |
| parents | 628f82e72d72 |
| children |
| rev | line source |
|---|---|
| 3 | 1 Metadata-Version: 1.1 |
| 2 Name: riboplot | |
| 3 Version: 0.1.0 | |
| 4 Summary: Plot read counts of RiboSeq data from BAM format alignment files | |
| 5 Home-page: https://github.com/vimalkumarvelayudhan/riboplot | |
| 6 Author: Vimalkumar Velayudhan | |
| 7 Author-email: vimalkumarvelayudhan@gmail.com | |
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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diff
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8 License: GPL |
| 3 | 9 Description: =============================== |
| 10 RiboPlot | |
| 11 =============================== | |
| 12 | |
| 13 .. image:: https://img.shields.io/travis/vimalkumarvelayudhan/riboplot.svg | |
| 14 :target: https://travis-ci.org/vimalkumarvelayudhan/riboplot | |
| 15 | |
| 16 .. image:: https://img.shields.io/pypi/v/riboplot.svg | |
| 17 :target: https://pypi.python.org/pypi/riboplot | |
| 18 | |
| 19 | |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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20 RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format). |
| 3 | 21 |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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22 There are two programs in the package: |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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23 |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
|
24 **riboplot** |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
|
25 Plot and output read counts (csv) for a single transcript. |
| 3 | 26 |
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7
096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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27 **ribocount** |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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28 Output read counts for all transcripts in an alignment. |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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29 |
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7571f5c89090
Simple error message now output to HTML. Detailed error goes to standard error.
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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diff
changeset
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30 For help on using these programs, please refer to :ref:`usage`. |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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31 |
| 3 | 32 |
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Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
11
diff
changeset
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33 Free software: GPL license. |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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34 |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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35 Documentation: https://riboplot.readthedocs.org. |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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36 |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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37 |
| 3 | 38 |
| 39 | |
| 40 | |
| 41 History | |
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096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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42 ======= |
| 3 | 43 |
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Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
11
diff
changeset
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44 0.1.0 (2015-08-24) |
| 3 | 45 --------------------- |
| 46 | |
| 47 * First release on PyPI. | |
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Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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48 |
| 3 | 49 Keywords: riboplot |
| 50 Platform: UNKNOWN | |
| 51 Classifier: Development Status :: 2 - Pre-Alpha | |
| 52 Classifier: Intended Audience :: Developers | |
| 53 Classifier: License :: OSI Approved :: BSD License | |
| 54 Classifier: Natural Language :: English | |
| 55 Classifier: Programming Language :: Python :: 2 | |
| 56 Classifier: Programming Language :: Python :: 2.6 | |
| 57 Classifier: Programming Language :: Python :: 2.7 |