Mercurial > repos > vimalkumarvelayudhan > riboplot
changeset 19:6e3b13906b54
Use packages from the test toolshed. Add bedtools dependency
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Fri, 28 Aug 2015 11:07:26 +0100 |
| parents | ef39290c19af |
| children | a013fc01d8f3 |
| files | riboplot.xml tool_dependencies.xml |
| diffstat | 2 files changed, 9 insertions(+), 6 deletions(-) [+] |
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--- a/riboplot.xml Thu Aug 27 13:03:28 2015 +0100 +++ b/riboplot.xml Fri Aug 28 11:07:26 2015 +0100 @@ -4,6 +4,7 @@ <requirements> <requirement type="package" version="1.2.1">matplotlib</requirement> <requirement type="package" version="0.8.3">pysam</requirement> + <requirement type="package" version="2.18">bedtools</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error" />
--- a/tool_dependencies.xml Thu Aug 27 13:03:28 2015 +0100 +++ b/tool_dependencies.xml Fri Aug 28 11:07:26 2015 +0100 @@ -1,13 +1,15 @@ <?xml version="1.0"?> <tool_dependency> <package name="matplotlib" version="1.2.1"> - <repository changeset_revision="5066727ab023" name="package_matplotlib_1_2" - owner="ribogalaxy" prior_installation_required="True" - toolshed="http://toolshed.ribogalaxy.ucc.ie" /> + <repository changeset_revision="55a75739919b" name="package_matplotlib_1_2" + owner="iuc" prior_installation_required="True"/> </package> <package name="pysam" version="0.8.3"> - <repository changeset_revision="190ad904a112" name="package_pysam_0_8_3" - owner="ribogalaxy" prior_installation_required="True" - toolshed="http://toolshed.ribogalaxy.ucc.ie" /> + <repository changeset_revision="d2615d52baee" name="package_python_2_7_pysam_0_8_3" + owner="iuc" prior_installation_required="True"/> + </package> + <package name="bedtools" version="2.18"> + <repository changeset_revision="ea89a5911878" name="package_bedtools_2_18" + owner="iuc" prior_installation_required="True"/> </package> </tool_dependency>