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annotate tool_dependencies.xml @ 23:787ee2d925bb

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Remove ez_setup from dependencies
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Mon, 31 Aug 2015 16:10:27 +0100
parents 3429405e2ce1
children 278d6aef2d7d
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="riboplot" version="0.1.0">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">https://pypi.python.org/packages/source/r/riboplot/riboplot-0.1.0.tar.gz</action>
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7 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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8 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
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9 <action type="set_environment">
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10 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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11 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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12 <environment_variable action="set_to" name="RIBOPLOT_PATH">$INSTALL_DIR</environment_variable>
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13 </action>
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14 </actions>
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15 </install>
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16 <readme>
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17 Requires installation of matplotlib 1.3.1 and pysam 0.8.3. RNA coverage requires bedtools installed.
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18 </readme>
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19 </package>
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20 </tool_dependency>