Mercurial > repos > vimalkumarvelayudhan > riboplot
diff README.rst @ 28:60bbd8ebe314
Working install (virtualenv)
| author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
|---|---|
| date | Wed, 02 Sep 2015 14:25:18 +0100 |
| parents | cff63cf0dea8 |
| children | fb64b970da25 |
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--- a/README.rst Wed Sep 02 12:23:20 2015 +0100 +++ b/README.rst Wed Sep 02 14:25:18 2015 +0100 @@ -27,26 +27,14 @@ Repository: https://github.com/vimalkumarvelayudhan/riboplot -Requirements ------------- -Python packages -............... -* matplotlib ``1.3.1`` -* pysam ``0.8.3`` + +.. note:: + + RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. -If you have a virtualenv setup, these packages and their dependencies can be installed -using:: - - pip install matplotlib==1.3.1 - pip install pysam==0.8.3 + This release of riboplot has been tested with bedtools version ``2.17.0``. -Bedtools -........ -RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. - -This release of riboplot has been tested with bedtools version ``2.17.0``. + On Ubuntu and derivatives, bedtools can be installed from the repositories using:: -On Ubuntu and derivatives, bedtools can be installed from the repositories using:: + sudo apt-get install bedtools - sudo apt-get install bedtools -