diff tool_dependencies.xml @ 19:6e3b13906b54

Use packages from the test toolshed. Add bedtools dependency

--- a/tool_dependencies.xml	Thu Aug 27 13:03:28 2015 +0100
+++ b/tool_dependencies.xml	Fri Aug 28 11:07:26 2015 +0100
@@ -1,13 +1,15 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="matplotlib" version="1.2.1">
-        <repository changeset_revision="5066727ab023" name="package_matplotlib_1_2"
-                    owner="ribogalaxy" prior_installation_required="True"
-                    toolshed="http://toolshed.ribogalaxy.ucc.ie" />
+        <repository changeset_revision="55a75739919b" name="package_matplotlib_1_2"
+                    owner="iuc" prior_installation_required="True"/>
     </package>
     <package name="pysam" version="0.8.3">
-        <repository changeset_revision="190ad904a112" name="package_pysam_0_8_3"
-                    owner="ribogalaxy" prior_installation_required="True"
-                    toolshed="http://toolshed.ribogalaxy.ucc.ie" />
+        <repository changeset_revision="d2615d52baee" name="package_python_2_7_pysam_0_8_3"
+                    owner="iuc" prior_installation_required="True"/>
+    </package>
+    <package name="bedtools" version="2.18">
+        <repository changeset_revision="ea89a5911878" name="package_bedtools_2_18"
+                    owner="iuc" prior_installation_required="True"/>
     </package>
 </tool_dependency>