Mercurial > repos > vimalkumarvelayudhan > riboplot

view README.rst @ 19:6e3b13906b54

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Use packages from the test toolshed. Add bedtools dependency
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Fri, 28 Aug 2015 11:07:26 +0100
parents b78a5ba760b1
children cff63cf0dea8
line wrap: on
line source

===============================
RiboPlot
===============================

.. image:: https://img.shields.io/travis/vimalkumarvelayudhan/riboplot.svg
        :target: https://travis-ci.org/vimalkumarvelayudhan/riboplot

.. image:: https://img.shields.io/pypi/v/riboplot.svg
        :target: https://pypi.python.org/pypi/riboplot


RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).

There are two programs in the package:

**riboplot**
    Plot and output read counts (csv) for a single transcript.

**ribocount**
    Output read counts for all transcripts in an alignment.


Free software: GPL license.

Documentation: https://riboplot.readthedocs.org.